RNA id: TU447579


Basic Information

Item Value
RNA id TU447579
length 5080
RNA type TUCP
GC content 0.44
exon number 2
gene id G377748
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 18062418 ~ 18068946 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCTGTTTGTCTGTTTGAGGGGCGTTACAGGGGTACTACAGCAGAGGTGATCTGTTGGACATGTTTAGAGTGGCAGGTGGAGTGAAATGATGTAATTTCCACATGTATCTCCACTCGACAGGCTGGGCAGGCTGGACTATTTGGGCaggggtattttttttttttttttacatttttctggggTGGGTTGATGGTTCAAGTCCAGTGCTTTGCTGGAGGTACTTACTCGGTTGAGGGGTCTCTTGCGGGTGCGTTGTCGGTTGAGGTTTTTGCCCCCTCCAAAGTGCCGGACAGGATAGTCCTGGGAGCCATGATGAGGCTGGAACCCCCCACTTTCGGGGTACATGCGGTGGCTCAGGAGCGATGGCAGCTTGCCTCGCCCTGAGGGGGAGTGGCCTTGCCCCCCACTCCGCCCACCTCCACCCATCATAGAGGAATCCTGCCTACGGCCAAAGCCGCGCCCGCCTGGCCCTCCGCCCCTGTGCTGGGACCTCTGTCCCGCACCCCAGCCGGAGCCTGAGAAAGCATCTCGAGCATGCCGCATTTTGGCGTTTCCGTGGGAGGCAGAGCCGCCAAAGCCACCACCCCCTCCAGCTCCACCCATCGCCCCAAAGCCCATGCCTCCACGCTGGGCCATCATGTCGCCCCGGGAGTCACCAAATACAATGTTACCAGATCTGTAGAGATCGCGGGGGCCAAGGGCAGAGGAGCGCGAGTCGAAAGACTCGTACTGGTCAAACCTGCAGAAGGAGGTGCAGAGCAAGTAGAGATGAAGCATTGGCACCTCTAATTTCATACTTTCACTTTCCCTTTGATTCATTTACTCTCCTGCTCTCCCTTAATGTTTTACTACTAGTAACTTAACTGATCTTTTAAAAAGTATCCCAAAGAACCCCACACTGATCTTTGgatgacaagttgcattttgCAAGTTGTCATTCATCCAAGCCATTCCCCACACCGATATCCAATTGGACAGCACTCTGGATAGTCCGTGAAGGGTCTGAGAACCCTTGCAGTCCCACTTGATCCTTTGCAATTTGGGATGGGGAGGAAGTTGCCGGGTCTGATCAAGAAGAGCCTCCAAAATGATGGTTGGGACAAACATGGAGAAACACCATTACTGAATTATTGTCTGGATCAAGTACTAAATGTGAATATATAGTTTGGCTCGAGTAAAAGAGATTCATATCACAGGTATACAGGTGAAGGAATGGCTTCAGTGATGGGGATTTTGTCATTAAAGCATGAGCAGCACCAGGGTATAAAGGTCAACAAATGGGAATACATTGGATCATCAGGCAATAGACTTCCCTTTGCCCTTGGGCAAGCTTCAGAAAACTGAATCTTAGGAGACATTGAGTCAGTTTTTCAGAAACAAGCTCTAGAGGGgtcagaaaataatattttcagaaCATCCTTTGGCAACCAATGGTATCTTGCAATCCACAGCCAAAGAAGAAACAAGCTAGGGACTTAGAGTGGGAACACAGACCAAGAGCACTGGGGACATCACTGTCTAAAAATGTCCTAGCACTCCTACTTAGAGAAGTGTTTTCTGAATTGACCACTTGTTTGCCAGGGCCATGTTTTGACAATACACAGATTGCACACCTAACGTACCGTTCATGATCTAGGCCCATCTATTCACATCTACGACAAAAACATCTATTAAAAAACATCCGTTCTGGTTCCTCTGCCATCAAAGCCACTTATATCTACATATCTTACTTGCCATCTAGTCAAACTGCATGCAAATACTAGCGCTAAACTACAGAAGATGAAGGTTTGCATCTTTTGCCTCTAGGTCACTAGCCCCATCTATTGATATATAACCGAACAGAAAACCCTACGCACCACAGAGAACAGAGAAACTAAAGCAATACTGACTGTGGAGGACAAAAATGTACTTtagattacatttaaatatgtattttgggcttcatttatcaaactggatgcAAACAAATTCATCTATGAATCTTGACTGATCAGGCTCAAATTGTACAACTGGTGAAGAAtagttactgcaattttattttatttgcattatgcTGTCAAGTTATAAGTCAAAACACTTATtttagttacacacacaccagtttaGTGAACATGTCGAGGTTATGATCCATCAAGAATAGGAACGAAGGAACGTATAGTACGAAGGAAATCAGCAAAACTTCTGTAAATgtggtgggattttttttaataaatttggtttgatcacaaaaacatttagtaaaagtttgataaatgaggtccaaAGGTGATAAGCAAAGACAAGTACAGCACCAGTAGATCCATCTTGATGGTCACTTGAGAAGTTGAGACATCGACACTCTTGACTAGACACCTTCGTTTGAGGAATGACCCGTTCTCGTTAAGATCTAGTTCTGCAATCGTATGCAAATTTGTAGCTCTGAAATATTCATTACAAATCTGTAGAAAACATTTGGACTCAGTGGTTCTGTCTATTACAGGCTTTAGAATTTAACGCCTGGCCTGTCTGATTTGTTTCCTGAGaattaaatattcatacacgtgatggggaaaaaaacatccatccTACCTGTCATTTCGACCCCCTCCTTTCATCCCTCCCTCTAACTGTGTTAGCATGTCGAGCCGCTGGTTGATCTTAGCGATCACGTCATCTGCATTGCCCccagaggaggagagaagagaaccAGACAGACCTCGCTTCATCTGTCCTCCACCATATCCACCAGACATCGAGTCCTTATAGCCATACAGGTCGTAGCTGCCAGatcctgaaaatgaaaacagcaaTCAAGTTggcaaatacattttaatccatAGACTCAATATTTTCACAATAGCAATAATtgtgaatatataaaattttccACAGTGCTACTAAAAACAATGATCTAAGGGGCTTGCTCCTAGGTTTCTATTTTTGGGTTATAGCTTCACAAATATTGGAGAGATATCAGTATCGGCGCctgtactgaaatctgcagtgacagtatcagtatcggcgcctgtactgaaatctgcagtgacagtatcagtatcagtatcggcacctgtactgaaatctgcagtgacagtatcagtatcggcgcctgtactgaaatctgcagtgacagtatcagtatcggcgcctgtactgaaatctgcagtgacagtatcagtatcggcgcctgtactgaaatctgcagtgacagtatcagtatcggagcctgtactgaaatctgcagtgacagtaacagtatcggagcctgtactgaaatctgcagtgacagtatcagtatcggcgcctgtactgaaatctgcagtgacagtatcagtatcggagcctgtactgaaatctgcagtgacagtatcagtatcggcgcctgtactgaaatctgcagtaacagtatcagtatcggagcctgtactgaaatctgcagtgacagtatcagtatcgaggcctgtactgaaatctgcagtaaCAGTATCGGCGCctgtactgaaatctgcagtatcagtatcggggcctgtactgaaatctgcagtaaCAGTGTCGGCGCctgtactgaaatctgcagtaaCAGTATCGGCACctgtactgaaatctgcagtaaCAGTATCGGAGCctgtactgaaatctgcagtaaCAGTATCGGAGCctgtactgaaatctgcagtaaCAGTATCGGAGCctgtactgaaatctgcagtaaCAGTATCGGAGCctgtactgaaatctgcagtaaCAGTATCGGAGCctgtactgaaatctgcagtaaCAGTATCGGAGCctgtactgaaatctgcagtaaCAGTATCTGAGCctgtactgaaatctgcagtaacagtaacagaaaATGAAGAGCCATGGTGTCATCTCGACACATAACTTTTTATTCCTGCCATCTCTATAAATGTTGAGTGCACGCATGTGTAGTAAACTGAACACTGGTTAAGTAAGAAATCCAGAAGGATTCTCACCTCTGCTGGAAGATCCTCCTCCACCCCAGCTGGAGAAACCTGTCCACGAGAGCAGGAGGAGAATATAAACCCTGTTAGGACTCTCAGAGATACACATGAAACTTCCTGCTCAGCCATACCACATCCTGTTCACTTCAGCTCTACGTTTGTATCTGTCGGTCAGTCTCCGGCACGGCCCTCAGACTCATATCCTCTCCGAGCGCACAGGACTAGGGCTAAACCACCGTCACTGCACTGTACAGCATGTTCAGGATGTAGTTTCATTCCTTTTAGACCATGAGCAAGAATCTGGTCcatattagtttaaaaataattcatatccTACGTAATAAACATACAAGAAGTGCAGCAGTAACAGAGACTGAACTGGACATCCTGTGCACAATACACCACTTACACAGGAGGAGGAGATTTAAAAACCTGTGGTGcactaatataatattatataatatatatttatttataaataacacaGAATTCAGACTATAATTGACACACTGTGTGTAGTTTAAATGCATTACAAAGAGAATTGAAGCCAGTATTTGTATTTCCTCATGTAGTAATGACTCCTAATGGTAAAAGATAACGATATAACCCATCTAATGCACttatatctataaataaataaaagatctgATTGTCTTTCTGTCCTGTTTAACGCACTACGTCGATTCAGGGCAAGATGCTAGTCATGCTAACGCTAGCTAGCAAAGCTTGCTAATCCTGACTAGCCGTCCTTTGTTAGTCTCATTCAGGCCCAGCAGCTCAGCATCGCGATCTACGGACGATTAATTAATAACCAAACGAAATAATTAcatctaaaatgtaaataacgCACGAGTTAAACACAGAAGAGGAATTCTGTAAAACAAAATGGCGCCGGTTGTAGCACTTTACCCGGCTAATGTTAGACacactgttagctagctagctagccagtcGCCAtcttccacacaaacacacactcgttttAAAAACATCCCCCTCAAAATGTCTGTATTATATTCacgttttaaaaataaaacccaaaacTCATACCTGATCCATATCCACGACCGTCCATTTTCACAGAAAGAAATTTAGCTACGATTCCAAAGTCCACGAAGCCGAACAGACACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU447591 lncRNA upstream 4397 18057461 ~ 18058021 (+) True G377756
TU447586 lncRNA upstream 12549 18034089 ~ 18049869 (+) True G377751
TU447573 lncRNA upstream 14126 18009886 ~ 18048292 (+) True G377742
TU447587 lncRNA upstream 20117 18041680 ~ 18042301 (+) True G377752
TU447570 lncRNA upstream 53262 18008947 ~ 18009156 (+) True G377739
TU447592 lncRNA downstream 4533 18073479 ~ 18074504 (+) True G377757
TU447595 lncRNA downstream 5926 18074872 ~ 18076339 (+) True G377759
TU447609 lncRNA downstream 41148 18110094 ~ 18110393 (+) True G377770
TU447640 lncRNA downstream 95007 18163953 ~ 18166225 (+) False rdh8b
TU447656 lncRNA downstream 135698 18204644 ~ 18206620 (+) True G377813
XM_034299911.1 mRNA upstream 57278 17987809 ~ 18005140 (+) True LOC113524903
XM_034299910.1 mRNA upstream 110240 17941545 ~ 17952178 (+) True soul5l
XM_034300110.1 mRNA upstream 120084 17919058 ~ 17942334 (+) True LOC113524905
XM_026911284.2 mRNA upstream 146155 17912389 ~ 17916263 (+) True LOC113524906
XM_034300127.1 mRNA upstream 158336 17898843 ~ 17904082 (+) True LOC113524915
XM_034300366.1 mRNA downstream 89147 18158093 ~ 18165060 (+) True rdh8b
XM_034300357.1 mRNA downstream 103684 18172630 ~ 18175771 (+) True LOC113524897
XM_034300354.1 mRNA downstream 224812 18293758 ~ 18309052 (+) True parn
XM_034300358.1 mRNA downstream 300098 18369044 ~ 18375405 (+) False LOC113524838
XM_034300359.1 mRNA downstream 300120 18369066 ~ 18375405 (+) False LOC113524838
TU447578 other upstream 5613 18055624 ~ 18056805 (+) True G377747
XR_004577315.1 other upstream 1207402 16822550 ~ 16855016 (+) False b3gntl1
TU446960 other upstream 1497902 16561383 ~ 16564516 (+) True G377269
TU446758 other upstream 1717794 16340768 ~ 16344624 (+) False G377132
XR_004577301.1 other upstream 1746033 16290730 ~ 16316385 (+) False LOC113537689
trnak-uuu_20 other downstream 50719 18119665 ~ 18119737 (+) True trnak-uuu_20
TU448033 other downstream 214048 18282994 ~ 18287310 (+) True G378105
TU448127 other downstream 425894 18494840 ~ 18496043 (+) True G378160
TU448141 other downstream 474725 18543671 ~ 18548752 (+) False txndc11
XR_004577335.1 other downstream 533621 18602567 ~ 18609984 (+) True cdc37

Expression Profile