RNA id: TU447595


Basic Information

Item Value
RNA id TU447595
length 1406
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G377759
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 18074872 ~ 18076339 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaggggtgccaagacttttgcacagtactgtaaatgaGAACATTAATATCAAAACCTTTATATCCCTCCATCAGCATTTTCTATTAAAGCAAAAAGTTACATCAGGCAGCAAAATCCATGAACTCGGGGTGCGTTTAGTTTTTCCTTCAGCTACAACTTCAGCACTAAGTGTCACTGTGAATGACGTCCGGACATCCCTGATATACAGAAATAGACGCTAACATTGCTAACTTTGGCCAGCTAAACTGATTTATTAGTGTTTACGTCTctgctttttcatttaaaattaatgtttagtGTCAGGTTAATGATTTAGTCACTATGTGCGTAACACGCGAAACAATATCGAGCATCAATGTCCTCATTACTACGTAAGAGTTTATTTTACTATACGCTAAAatactcatttctgattggccagctgGTGGTTGTGTGTTACTCTGTTACACTGAAATGCCTTTAATGCATAAATCAACAACCACAAATAACAGTTTAGCGGATAATTAAACAGACTTTTGCTTCATTAATGAAACTAATATTCGTTCATTTTTTATAGAATTATGAAAAACACTGCATCGCAGCCTCAGTGCATCATGGTCCTGTGGGGTTGTGATTAGATCATTTAAAtatatcttctttttttcctcttaaagaTTTTTCCCACATTCATGTggttaaatataaacctgtaggATTGGAAATTGCCAATCTGGCAACTGTAATGGACATTTATTcaatataaatgattaaaaatgaccATTTGCAGGACGGATCCTGAAAACACCCCAAAACTCAACGGGCCTGTAGTTGGttctaaaatataatgtaatgagtaatatgtaATATGTTAATGTAATAGTGCGCCTCGTCGTAATATCGGAAACTTTAGCGTTAACTTTAACAGCATCTGCACAGGCAGCGTTTTTAAGCACCATTAAAACTCTGTTTTTCTTCATCCTTGGAGACGGAAATCCCACaattcacttcactttactaaCATGGCGAATAAAACCATCACTCTGTCTGAGGAAATCTTCTGATAAACTCTTAACATGAGCATAATTAATTCACTGGGTGATTAGCATAACTAGTTCACACATTCATGTTGCATTACTGAGTGTTAATGAGGACTGATTAGTGCACTGATTAGCGCACTGATTAGCGCACTGATTAGCGCACTGATTAGCGCACTGATTAGCGCACATGACGAGCACACGGTAACAGACTTTGGTCATCATTAGCAACGTTGGTCGCTTAGGAGAAAGTTTGCTTAACGTTtgatattaatgaaaataaataaaaaggtggAGTCAAGTGAAATCGGTGGGCGGAGTTTAAGAGTGATGTCACCTAGGAGCGGGGTCTCGTGGTCACCTGTTCTTCCACCGTGAACGTGTAGTTATACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU447592 lncRNA upstream 368 18073479 ~ 18074504 (+) True G377757
TU447591 lncRNA upstream 16851 18057461 ~ 18058021 (+) True G377756
TU447586 lncRNA upstream 25003 18034089 ~ 18049869 (+) True G377751
TU447573 lncRNA upstream 26580 18009886 ~ 18048292 (+) True G377742
TU447587 lncRNA upstream 32571 18041680 ~ 18042301 (+) True G377752
TU447609 lncRNA downstream 33755 18110094 ~ 18110393 (+) True G377770
TU447640 lncRNA downstream 87614 18163953 ~ 18166225 (+) False rdh8b
TU447656 lncRNA downstream 128305 18204644 ~ 18206620 (+) True G377813
TU448043 lncRNA downstream 235695 18312034 ~ 18313352 (+) True G378114
TU448074 lncRNA downstream 251432 18327771 ~ 18328173 (+) True G378129
XM_034299911.1 mRNA upstream 69732 17987809 ~ 18005140 (+) True LOC113524903
XM_034299910.1 mRNA upstream 122694 17941545 ~ 17952178 (+) True soul5l
XM_034300110.1 mRNA upstream 132538 17919058 ~ 17942334 (+) True LOC113524905
XM_026911284.2 mRNA upstream 158609 17912389 ~ 17916263 (+) True LOC113524906
XM_034300127.1 mRNA upstream 170790 17898843 ~ 17904082 (+) True LOC113524915
XM_034300366.1 mRNA downstream 81754 18158093 ~ 18165060 (+) True rdh8b
XM_034300357.1 mRNA downstream 96291 18172630 ~ 18175771 (+) True LOC113524897
XM_034300354.1 mRNA downstream 217419 18293758 ~ 18309052 (+) True parn
XM_034300358.1 mRNA downstream 292705 18369044 ~ 18375405 (+) False LOC113524838
XM_034300359.1 mRNA downstream 292727 18369066 ~ 18375405 (+) False LOC113524838
TU447579 other upstream 5926 18062418 ~ 18068946 (+) True G377748
TU447580 other upstream 5926 18062418 ~ 18068946 (+) False G377748
TU447581 other upstream 5926 18062418 ~ 18068946 (+) False G377748
TU447578 other upstream 18067 18055624 ~ 18056805 (+) True G377747
XR_004577315.1 other upstream 1219856 16822550 ~ 16855016 (+) False b3gntl1
trnak-uuu_20 other downstream 43326 18119665 ~ 18119737 (+) True trnak-uuu_20
TU448033 other downstream 206655 18282994 ~ 18287310 (+) True G378105
TU448127 other downstream 418501 18494840 ~ 18496043 (+) True G378160
TU448141 other downstream 467332 18543671 ~ 18548752 (+) False txndc11
XR_004577335.1 other downstream 526228 18602567 ~ 18609984 (+) True cdc37

Expression Profile