RNA id: XM_026914086.2


Basic Information

Item Value
RNA id XM_026914086.2
length 1762
RNA type mRNA
GC content 0.40
exon number 8
gene id LOC113526761
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 17333296 ~ 17338806 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTGAGAGCAGACGGTGTTTCATCATTTTCAGTAGGAGGGATTGTGAGGTTGAGCAACTTGGAAACATACCACAGAAAGAGGAAATGACCAAACCCAAGAGAACTGGAGGGAGAGACACATAGCGTAGAATATATATTACAGAGGATTACAAAGATTCATatttactcctttttttttttttttaaacaagtctCTTAATAGTGGATTGAAGTTTTTGTGAACATCAATGAAGCTTTAGTTGAGTTCAGAATGaagatcctcctcatcatcctcacctTCCACCTGATCTCAGGTCCAGTGCACTGCTCTGATGTGATTGGTTACCCTGGAGGTTATATCATAATTGATTTCAAACACCCAATTAATATCAAgtctactgtatatttttgcaaatttaaaacacaaacagtgtgtGAACCTCTGATAACAGCTCAGGGCAGTCAGCTGCTCACAGGGGTTCATAAGGACAGATTTACTCTGTTTGGCTCCAGTGGATTATTCACACTGATATTCAGAAACCTGAGTTTACAGGATACTGGAATATATCAGATTGGAGAGTTTGGACTGGCAGGGAATCATAACATTAACCTGAAAGTGAACAGTGATCCATGTTGTAGCGGGACAAGAACAGTAACAGGTTTTTTGGGACAGACTGTGACGATCAGCTGTTCCTATCCAAGGGAGTTTATAACAAACACTAAGTCCTTCTTTAAACTGGATGGTCTCAGTGTAAATGAAGTGATCCTCACTAGTGGAAGAGAACCGCATCAGGATGGCAGATTCTCCATTTCTGATGATGGGAGGAATAAAGTTTTCAGTGTGAACATCAATGATGTGAGAGAAGATGATGGAGGAGTTTATTTCTGTGCAGTTGATAATGAAGGGACTGCCGTTAATTATCACTCGCTCTTCACAGCAATTCAGCTCCAAGTCATTGAAGTACCACAAGACACAACAGAGAATCCAGATGGCACATCAGACACAACTCAGCCTGAAGTAACAAGTGACACAACAGAGAATCCAGATACGTCAGACGCACTTCAGCCTGCAGGTTCCTCACTCATCATCaccatgtgtgtctgtgtgactgtGCTGCTGCTGGGAGTATTTGTACTCATCTACAAGTTGAAAAGCAACAAGTCACAAGATTCTGCCTCTATAAGCCAGCAAACAAATAACATGACGGctgattatgaaaataatccatcaCAGATTCAGAACATCATAATGCGTCCAGTCTACCAAAACCTAAATCCCAacaccaaccaatcagattcagtcTACCAGAGTCTAGACCCCAACACCAACCAACCAGAGTCAGTCTACCAGAGTCTAGACCCCAACACCAACCAACCAGAGTCAGTCTACCAGACCCTAAAACTGGACTCGGTTTACTGCAACTTCCAGttcagttccagttcatcagATTTAGTCCACTGTAACGCTAACCATGTTTCACCATAGCTTCATAttcttttaataatctgaatgagaGCTCAGAGTAAAAATCAGTCACATATTCACAAATGAAGTTTTATTCCAACAAAATGGTGATTAATCTTTTTGTATTAGGTAGAAAAATGGCAGCCATGTAAACCTTTGTATCCTGTTATAATCAAAATCTGCACATACGTTCTGTACTTGTCCAGGCAGTGGGATGTAAATTCAACTCAGCTGGCTCATAATTTGATATTTGCCAGACATTCAGCCCAAATACTAGTTGtcaaaaaaataacagtaaatgtttagtttaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU447754 lncRNA downstream 16316 17316551 ~ 17316980 (-) True G377874
TU447707 lncRNA downstream 79581 17241835 ~ 17253715 (-) True G377847
XR_004577336.1 lncRNA downstream 255135 17068536 ~ 17078161 (-) True LOC117596165
TU447211 lncRNA downstream 281031 17032903 ~ 17052265 (-) True G377474
TU447172 lncRNA downstream 337647 16995398 ~ 16995649 (-) True G377441
TU447776 lncRNA upstream 42375 17381181 ~ 17381602 (-) True G377892
TU447801 lncRNA upstream 130149 17468955 ~ 17560120 (-) True G377916
TU447836 lncRNA upstream 232254 17571060 ~ 17573894 (-) False LOC117596149
XR_004577310.1 lncRNA upstream 232259 17571065 ~ 17573884 (-) True LOC117596149
TU447873 lncRNA upstream 349285 17688091 ~ 17694412 (-) True G377979
XM_034300125.1 mRNA downstream 11150 17317702 ~ 17322146 (-) True LOC117596143
XM_034300124.1 mRNA downstream 11150 17320222 ~ 17322146 (-) False LOC117596143
XM_026914469.2 mRNA downstream 35069 17281564 ~ 17298227 (-) True colgalt1b
XM_034300112.1 mRNA downstream 35070 17281564 ~ 17298226 (-) False colgalt1b
XM_026914397.2 mRNA downstream 57539 17274442 ~ 17275757 (-) False nxnl1
XM_026913552.2 mRNA upstream 1702 17340508 ~ 17345865 (-) True LOC113526483
XM_026913907.2 mRNA upstream 21268 17360074 ~ 17383012 (-) False LOC113526656
XM_026913906.2 mRNA upstream 21268 17360074 ~ 17383012 (-) True LOC113526656
XM_034300118.1 mRNA upstream 67302 17406108 ~ 17427875 (-) False LOC113526629
XM_034300117.1 mRNA upstream 67302 17406108 ~ 17427875 (-) True LOC113526629
TU447735 other downstream 65266 17266229 ~ 17268030 (-) True G377862
TU447682 other downstream 138304 17182732 ~ 17194992 (-) False LOC113525650
TU447143 other downstream 481633 16845012 ~ 16851663 (-) True G377416
TU447144 other downstream 487694 16845012 ~ 16845602 (-) False G377416
XR_004577334.1 other downstream 857865 16425454 ~ 16475431 (-) False LOC113537389
TU447860 other upstream 369194 17708000 ~ 17712592 (-) False ubl5
TU447895 other upstream 464454 17803260 ~ 17814445 (-) True G377994
XR_004577358.1 other upstream 824740 18163546 ~ 18166960 (-) False LOC113524896
TU448228 other upstream 1024637 18363443 ~ 18365921 (-) False gpank1
TU448229 other upstream 1024637 18363443 ~ 18365921 (-) False gpank1

Expression Profile