RNA id: TU448033


Basic Information

Item Value
RNA id TU448033
length 1786
RNA type TUCP
GC content 0.45
exon number 2
gene id G378105
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 18282994 ~ 18287310 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAATTAACCAAATTTCTAACACAAGGTACATGGAAGAAACAAAAATTCAACACAAAACATgtacttaattattatttaacagatGGATCCACCCACTCATCTAATTTCAAAACCtcttgaaggaaaaaaaggagaaggtGACATAGAAGGAGAGCAATATAGAGTGGGAGAGATACAGAGGCAAGTCTGGGCTGAAACTCGGGTCAGTTGTGTTACTCGCTGCTGTTCATCAAAAGCATTTAAAGGATCCAGAAAAAATGCTGCAGTTTTCGAGGACGTGACCACTGCGCAGAATTAAGATGCGGAGAACACATATATTGTGTTTAATGGTTAGAATAGCAAGCAACAAAGGATAAGTGTGACAATAAACTCTGCTGTATGGTAGTTATTTGTGAATTACAATTAAAGTTTTATACTGTGACTGTGAGGGTGGAGCTTTCACAATGACATGGCCATGTTAAACTGGTTTAGAAAACTTTTTATCTGCAATCTAAACTCCATCATCCATTACATCATATACGTTAATATTaaacatgatatttttaaacCCAAATTAGAAGGCATGAATCCAATCCCATTATTCTCTTCTTTGCATGAAGAAGAAATAAACCTGCTGCTCTGACTAATACATTTAGAAAAGCACGTAAATATTTGGTGTCATGATTGCTCCATTACTGTCTTGATGTTTTGTATGTTTCCGGAAGCCGTAGTGATTATATGAACGTCTGTCAGCACAAGCTTAATcaccatataaataaaatctaaagtgGAGAATCTGCTATTATCTCCACAGTTCTTTAGCATTGTACACATCCATAATAAGTCTAATAAGGAAGTCCAAGCATGTGCTATGGGTTCTGCTTCACGTCCTCCTTGGTGTGATTCTTCTGATGCGCCCTGAAGCTGCCCAGATAAGTGAAGCCCTGATCGCAGATGCTGCAGTGGTACGGTTTCTCTCCCGTGTGAACTCGCAGGTGTGTTTTGAGCACGTCGGGCCGAGCGAACGTTTTTGGGCACTGAGTGCAGCTGTACGGTCGTTCTTTAGTGTGAACGCGTTCGTGCTGCTTCAGGTTGATGCGATAGAAGAAGCTGTTGCCGCAGAACGAGCACTGGAATGGCCTCTCGCGCTTCTCACCTACGTGGATCCGTTTATGGGTGTAAAAATGCCGCGGGTCTGAAAACCCCTTCCCACAGTGGTCGCACAGGAACGGCTTCTCCCCCGTGTGCGTGCGCTCGTGCCGGTCGCGGTTCACTTTTTGGCCGAACGTCATGTCGCAGTAGGAGCAGGAGTATGGCTTTTCACCCGTGTGAACCCTCTGGTGCTGTTTCAGAGCGCTGATGGTGATGAAGCCTTTCTCACAGACGGAGCACACGTACGGTTTCTCGTTAGTGTGCACGCGTTCGTGTTTTTTGAGGTGTGTTTTGTGATAGAAACACATTTCACAGTAAGCGCACTGAAACGGCCGCTGCCCGGTGTGTATGCTCTGATGGCATTTGAGGTTTCCTTTCGTCTTGAAGCAGTTGCCGCACAATTCACAGCGGAAAGGTTTGTCTCCGCTGTGTGACTTCATGTGGACTTTGAGGGCCGAGTGCGTGGGGTATCCTTTCTCACACACGGTACACACGTGAGGACGAAGTGTCTTTTGTTTTACGCGATTCTCGTGCATTTTCATGTGTCTCGTCAAAAACGCTGCAGACATCAACTCCTGTCCGCAGATGGTGCAGGGAGAGATCGTTTTTATTCcgctcttcttctttttccgaTTTCGTTTCACTGAGGATTTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU447656 lncRNA upstream 76374 18204644 ~ 18206620 (+) True G377813
TU447640 lncRNA upstream 116769 18163953 ~ 18166225 (+) False rdh8b
TU447609 lncRNA upstream 172601 18110094 ~ 18110393 (+) True G377770
TU447595 lncRNA upstream 206655 18074872 ~ 18076339 (+) True G377759
TU447592 lncRNA upstream 208490 18073479 ~ 18074504 (+) True G377757
TU448043 lncRNA downstream 24724 18312034 ~ 18313352 (+) True G378114
TU448074 lncRNA downstream 40461 18327771 ~ 18328173 (+) True G378129
TU448081 lncRNA downstream 54923 18342233 ~ 18351811 (+) True G378136
TU448053 lncRNA downstream 71168 18358478 ~ 18360907 (+) True G378118
TU448107 lncRNA downstream 113283 18400593 ~ 18401249 (+) True G378150
XM_034300357.1 mRNA upstream 107223 18172630 ~ 18175771 (+) True LOC113524897
XM_034300366.1 mRNA upstream 117934 18158093 ~ 18165060 (+) True rdh8b
XM_034299911.1 mRNA upstream 277854 17987809 ~ 18005140 (+) True LOC113524903
XM_034299910.1 mRNA upstream 330816 17941545 ~ 17952178 (+) True soul5l
XM_034300110.1 mRNA upstream 340660 17919058 ~ 17942334 (+) True LOC113524905
XM_034300354.1 mRNA downstream 6448 18293758 ~ 18309052 (+) True parn
XM_034300358.1 mRNA downstream 81734 18369044 ~ 18375405 (+) False LOC113524838
XM_034300359.1 mRNA downstream 81756 18369066 ~ 18375405 (+) False LOC113524838
XM_034300360.1 mRNA downstream 81996 18369306 ~ 18375405 (+) True LOC113524838
XM_034299917.1 mRNA downstream 95013 18382323 ~ 18549969 (+) True txndc11
trnak-uuu_20 other upstream 163257 18119665 ~ 18119737 (+) True trnak-uuu_20
TU447579 other upstream 214048 18062418 ~ 18068946 (+) True G377748
TU447580 other upstream 214048 18062418 ~ 18068946 (+) False G377748
TU447581 other upstream 214048 18062418 ~ 18068946 (+) False G377748
TU447578 other upstream 226189 18055624 ~ 18056805 (+) True G377747
TU448127 other downstream 207530 18494840 ~ 18496043 (+) True G378160
TU448141 other downstream 256361 18543671 ~ 18548752 (+) False txndc11
XR_004577335.1 other downstream 315257 18602567 ~ 18609984 (+) True cdc37
TU448343 other downstream 493728 18781038 ~ 18822056 (+) False LOC113525834
TU448412 other downstream 650190 18937500 ~ 18942328 (+) True G378354

Expression Profile