RNA id: TU448053


Basic Information

Item Value
RNA id TU448053
length 2312
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G378118
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 18358478 ~ 18360907 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTCCCGTCGGCCATCTTTGATGAGGCGCTGAAATGACCTCCAGCGGAGTGTTCTCTCCGTCCAGCACGTCTCTCTGTCTTGTCCTCCTCTCATGTCTCCGCTcgtccttttttctttttgttttgcttttttcctttctttcggTGCATGACAGCATGTGAGAGCGTGatccccccccacacacacccctcgCTATGGCGGCACTATTAACGGGATTTGGTTTGGTatcattcatttccatttctctttttgtgtcCTTAGCGTCCAGGCTAACGTCTGATGATCAAACACACGCttctgaaaaaggaaaaagcgcTTTCGTGTCGCGGCGGTGTCACGTCGAGTCCTCGCACGTTGTCGGACGGTGGACGCCAGCTGCCGTACAACTACAATCTGTCCCGCTCtttactcatcacacactccgaCAGGACGAACGGTTTCTATTAACGACTCAGTCGAAGTACGATTACCGCCACTCTGCTAATGCTTAGCACGCTAAATCTACTTGACTTGCGCCATTTGATGGAGGCGGGCAAATACGGCCACCCCTCTCTGCTAATTATAATATGAGGAGGTGCACACCCTCCATAACTGtagttcatcatcatcatcatgactacactacccataattCCTCCTGTAGAGCTGTAAAAGAAGGTTATAACAGTGTGGCTCAGAAGTAAAAACGTGCTTATTACTATGTAATTATCATCcaaagttcattttaaaaagatttcttCATCTGAACCAGATAAAACTCCTCGATAAAGAGGGAATAAAGTAAATACTGGGTGCAGgggcgtgtgtttgtgttggacAGTGTAACAAGCTGCCATCCTGAGAACCAAACACGCAtatgtgggcggagctacaaacactgcacatcactgattggtcaaacacaATCGTTAAAGAATCAGCAGGTGTTCACATGagtccaaaaaaaacccaaaaaaacaatgAGATGCATGAGTCTGAGATCTTCAGTCATGTGGGATAACATTCCCATCAAATACAACAGAAAACACGCAACGTTCCAATATACTGTCAACAAAAGTGCTGCGTAGGAAATGATGTCACCAAACCCCACCCACCAGAGAAACCCCACCCACTTTCCTGGGCTGTGGAGGCTTGTTCGATGGGAAACAAACACTTGGCTGCTCACAGAGCGTCTGAGAGCttctgtacacttttctggcccgGAGATTCAGAATGCTGGaggctgcaatctgattggctcttcaCATTCCCATGTTTACACACTTCTGCGTATTTCTGCGTTTCTCTGTCTCCACTTGACGTAACAGTTTATGACGTGCTAACGTCACCTTGTACATGGAGACTATTGCTAGATCGTTTCCGTGGTAAccgttttaaacattttcaccGAGTCAGAGTTTATATGTTACTTTATGAGCATTTATGAGTGTTTATGAGCATCCTTACACAAAATGGTTTTTTTTCgtatttatggatttttttgttaatatttcgTGTTCAGTCTTCAGCGAGGCTTCATGCTTCATGATGATCTTAATCATTCAGTTCTCCTGCTGCGATTTTGgataaacatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggaacagcAGAAAGCAGACTGAGACTCCAGAGACCTGCAGAGCtgtctcaccacacacacacacacacacacacacacacacacacacacacacacacggctgaaAGGTCAGGACAGGCGCGGCTAAACAGATGCTAATCCTCTCCTCTGGGACACAGGGATTGAACGACACGACCTTTACTGCGggaaactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgggatGGAGCCATGCTCTCGCTATAAACACTACGTGACCTGATTATAATGGTCGTATACCTGTAGACGTGTGGTGGATGTTTACTGTGTCTCTTCATCACTGTGTTAGTCTCAGATAAGCAACATCACTCTAAATAAAAACTTCATCTGAGTTCACCAGCGCAGGTTACAGGCTAAGCTAAGATAGCCATGCTGGAGAATCTACTGACTTTAGGGAGTTATGATGCTAGTACTGCTAGATAATAACACAAACTCATTTACTTTCATCTACAAACCACAATATtatcaactctctctctctctgtatctctctctctgtctgtctctctctctctctgtctctctgtctgtctctctctgtctctctctctctctctctctctctgtatctctctctctgtctctctctctctctctctctctctctctctctctctctgtctgtctctctctctctctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU448081 lncRNA upstream 6667 18342233 ~ 18351811 (+) True G378136
TU448074 lncRNA upstream 30305 18327771 ~ 18328173 (+) True G378129
TU448043 lncRNA upstream 45126 18312034 ~ 18313352 (+) True G378114
TU447656 lncRNA upstream 151858 18204644 ~ 18206620 (+) True G377813
TU447640 lncRNA upstream 192253 18163953 ~ 18166225 (+) False rdh8b
TU448107 lncRNA downstream 39686 18400593 ~ 18401249 (+) True G378150
TU448108 lncRNA downstream 42927 18403834 ~ 18404653 (+) False G378151
TU448110 lncRNA downstream 42927 18403834 ~ 18459466 (+) True G378151
TU448134 lncRNA downstream 174744 18535651 ~ 18536333 (+) True G378163
TU448142 lncRNA downstream 189956 18550863 ~ 18551872 (+) True G378166
XM_034300354.1 mRNA upstream 49426 18293758 ~ 18309052 (+) True parn
XM_034300357.1 mRNA upstream 182707 18172630 ~ 18175771 (+) True LOC113524897
XM_034300366.1 mRNA upstream 193418 18158093 ~ 18165060 (+) True rdh8b
XM_034299911.1 mRNA upstream 353338 17987809 ~ 18005140 (+) True LOC113524903
XM_034299910.1 mRNA upstream 406300 17941545 ~ 17952178 (+) True soul5l
XM_034300358.1 mRNA downstream 8137 18369044 ~ 18375405 (+) False LOC113524838
XM_034300359.1 mRNA downstream 8159 18369066 ~ 18375405 (+) False LOC113524838
XM_034300360.1 mRNA downstream 8399 18369306 ~ 18375405 (+) True LOC113524838
XM_034299917.1 mRNA downstream 21416 18382323 ~ 18549969 (+) True txndc11
XM_034300413.1 mRNA downstream 25020 18385927 ~ 18390650 (+) False LOC117596190
TU448033 other upstream 71168 18282994 ~ 18287310 (+) True G378105
trnak-uuu_20 other upstream 238741 18119665 ~ 18119737 (+) True trnak-uuu_20
TU447579 other upstream 289532 18062418 ~ 18068946 (+) True G377748
TU448127 other downstream 133933 18494840 ~ 18496043 (+) True G378160
TU448141 other downstream 182764 18543671 ~ 18548752 (+) False txndc11
XR_004577335.1 other downstream 241660 18602567 ~ 18609984 (+) True cdc37
TU448343 other downstream 420131 18781038 ~ 18822056 (+) False LOC113525834
TU448412 other downstream 576593 18937500 ~ 18942328 (+) True G378354

Expression Profile