RNA id: TU448226


Basic Information

Item Value
RNA id TU448226
length 1280
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G378229
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 18306021 ~ 18307324 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGATCTGCACCTGCTCCAGCTGGCTGAGAGACACGAACGCCGACGTATCATCCACCCAAGACACCTGGATGTTTCCTGAAGGTTACAGCAGAGTAGATATCAGATATAAACATTACTGCAACGTGTTACAGAGCCACACTTCTTCAGGAAGTCAGAGTCAGGGGGCAGAGAGActgatttacaccacagcgcccTCCGCAGGCTAGTGGCATCATTTGGTTTTACATGTTTGCACATGTTCAGTTTCAGGTGTAATGTTTCCTGTGCTTGCAATTTAAACATCCATTTTTCTGATAAAAAAGAGGTAGGGGTAGATAACTGGGTGGATGGAGTGATGGCTGGAAGGTGGGGTATGTGGGTCGATTGAATGGTAAATGGATGGAGTGTTAGATGGTTGGATGGAGGactggatagatggatgagGAGAGGGGTAGGGAAGTAGATGAACAAAGGGGTAGGTGGGTGGATAGCAGGATGGAAGGATAGGTGATCATttggatggatgggtATGTTGGTGGACAGAGTGGTAGATGGATGCAGGGGTGGATGGGTAGGTGCAGGGGTGAGTAGGCAACTGGGTGGATGGAGGAGATGGTAGATGGAAAGGTGGGAAGGGCTGGGAAAGTATATGGATCAGGGGTAGGTATGTGAGTAGACGGATGGAGGAGTGGATGGATGAAGGTATGTTGGTAGATGGATGGAggggtggatgggtggatgaagAAGTGGGTTGGTTGATGGAGTGTAGCTGGATAGATGGGAAGAATGGAGGACATGGATGGTCAGGTATATGGATAGAAgggtggatggatggctggCTGGATGGACAAGCGAGTAGATAGATGGGTAGATGGATAGAGGAGTGGCTCAGCAACTGGGTGCACAGATGGGTAGATTGACGAAGGAGTAGACGAGTAGAAGTATTTAGGGGTAGGTGGGTAAATGGATGGAGGAActgatgaatggatggatttgtaaatggataaatgatagagaaagacagaggctaggtggatggatggatggatggatgtgtaaCTTGCAGTTAGAAGAAGAGTGTTACCGAAGGCGCTGAACAGCTGGTACAAGTCACTGGTTTTCCACTCTTTAGGGAAGGTGACGTACAGAACGTTGTCCCTCTTCGGCTGCACTGAAACACAACCAAGTgttacatcactcatcactcacacacacacacacacacacacacacacacacacacacacacacagagagagagagagagagagagagagttctgcTTCTGACTTACAGTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU448219 lncRNA downstream 25104 18277277 ~ 18280917 (-) True G378222
TU448028 lncRNA downstream 33590 18246707 ~ 18272431 (-) True G378102
XR_004577359.1 lncRNA downstream 58643 18246693 ~ 18247378 (-) True LOC117596181
TU447963 lncRNA downstream 229609 18074874 ~ 18076412 (-) True LOC117596118
XR_004577283.1 lncRNA downstream 229682 18073382 ~ 18076339 (-) False LOC117596118
TU448233 lncRNA upstream 1088 18308412 ~ 18308929 (-) True G378232
TU448215 lncRNA upstream 2959 18310283 ~ 18310656 (-) True G378220
TU448251 lncRNA upstream 28353 18335677 ~ 18375537 (-) True G378241
TU448257 lncRNA upstream 62958 18370282 ~ 18370769 (-) False G378247
TU448249 lncRNA upstream 79752 18387076 ~ 18390173 (-) True G378239
XM_034300356.1 mRNA downstream 13060 18285478 ~ 18292961 (-) False LOC113546189
XM_034300355.1 mRNA downstream 13081 18285478 ~ 18292940 (-) True LOC113546189
XM_026945949.2 mRNA downstream 15804 18285478 ~ 18290217 (-) False LOC113546189
XM_026945950.2 mRNA downstream 15804 18285478 ~ 18290217 (-) False LOC113546189
XM_026945951.2 mRNA downstream 15804 18285478 ~ 18290217 (-) False LOC113546189
XM_034300352.1 mRNA upstream 3448 18310772 ~ 18324071 (-) False LOC117596179
XM_034300353.1 mRNA upstream 3448 18310772 ~ 18324066 (-) True LOC117596179
XM_034300351.1 mRNA upstream 3448 18310772 ~ 18324059 (-) False LOC117596179
XM_034299915.1 mRNA upstream 21208 18328532 ~ 18337656 (-) True LOC113524853
XM_034300364.1 mRNA upstream 33169 18340493 ~ 18360680 (-) False LOC113524862
XR_004577358.1 other downstream 139061 18163546 ~ 18166960 (-) False LOC113524896
TU447895 other downstream 491576 17803260 ~ 17814445 (-) True G377994
TU447860 other downstream 593429 17708000 ~ 17712592 (-) False ubl5
TU447735 other downstream 1037991 17266229 ~ 17268030 (-) True G377862
TU447682 other downstream 1111029 17182732 ~ 17194992 (-) False LOC113525650
TU448228 other upstream 56119 18363443 ~ 18365921 (-) False gpank1
TU448229 other upstream 56119 18363443 ~ 18365921 (-) False gpank1
TU448230 other upstream 56119 18363443 ~ 18365921 (-) False gpank1
TU448264 other upstream 64257 18371581 ~ 18372485 (-) True G378247
TU448303 other upstream 304153 18611477 ~ 18618929 (-) False LOC113524840

Expression Profile