RNA id: TU448228


Basic Information

Item Value
RNA id TU448228
length 644
RNA type TUCP
GC content 0.56
exon number 3
gene id gpank1
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 18361798 ~ 18365931 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTGATTCACGTGATCCTCAGCGCGCTGCAGAGTTGCAGTCGGCTTTAACTACACATTTATCATGTGACGGTTTAATACACATCCTGTGGAGTAAAACAGGAAGATTAACCTGTTAATAAGAAGCAAAACCAGCGTCACAGGATCTAAAGCCTCTGCACCATGAGACGCTCCGGTTTCTTCATCCGGgcgagagaggaggagaagcgATGgacggagagggagagagagacggagagagagagacctgcgGCGCTGAATGGAGACGAAGCGAGAGACTTTTACCGGAGTCTGTTTGAAGACGAGGACGgagtgaggagagaggagaggagagaggagaggagagagaagaggagagaggagaggagagaggagaggagagaggagaggagagagaagaggagagagaagaggagagagagacggcgAGCGAGAGCAGGACGGAGTCGTGGAAAAGGAGGCGGAGCTGGTGAAGGAGGGGTGAAGAATAGCGGAGGCGGAGCTGGTGAAGGAGGGGTGAAGAATAGCGGAGGCGGAGCTGGTGAAGGAGGGGTGAATAGCGGAGGCGGAGCTGGTGAAGGAGGGGTGAATAGCGGAGGCGGAGCTGGTGAAGGAGGGGTGAATAGCGGAGGCGGAGCTGGtggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU448215 lncRNA downstream 52787 18310283 ~ 18310656 (-) True G378220
TU448233 lncRNA downstream 54514 18308412 ~ 18308929 (-) True G378232
TU448226 lncRNA downstream 56119 18306021 ~ 18307324 (-) True G378229
TU448219 lncRNA downstream 82526 18277277 ~ 18280917 (-) True G378222
TU448028 lncRNA downstream 91012 18246707 ~ 18272431 (-) True G378102
TU448257 lncRNA upstream 4361 18370282 ~ 18370769 (-) False G378247
TU448249 lncRNA upstream 21155 18387076 ~ 18390173 (-) True G378239
TU448269 lncRNA upstream 56696 18422617 ~ 18423142 (-) True G378252
TU448280 lncRNA upstream 140184 18506105 ~ 18570213 (-) True G378254
TU448291 lncRNA upstream 177750 18543671 ~ 18544156 (-) True G378265
XM_034300364.1 mRNA downstream 2763 18340493 ~ 18360680 (-) False LOC113524862
XM_034300365.1 mRNA downstream 2763 18340493 ~ 18360680 (-) False LOC113524862
XM_034300361.1 mRNA downstream 2763 18340493 ~ 18360680 (-) True LOC113524862
XM_034300363.1 mRNA downstream 8368 18340493 ~ 18355075 (-) False LOC113524862
XM_034300362.1 mRNA downstream 8368 18340493 ~ 18355075 (-) False LOC113524862
XM_026911221.2 mRNA upstream 178 18366099 ~ 18367512 (-) True LOC113524861
XM_026911218.2 mRNA upstream 10658 18376579 ~ 18379765 (-) True LOC113524859
XM_034300407.1 mRNA upstream 26509 18392430 ~ 18404667 (-) True LOC117596188
XM_034300410.1 mRNA upstream 40983 18406904 ~ 18471323 (-) True LOC113524842
XM_034300409.1 mRNA upstream 85687 18451608 ~ 18471315 (-) False LOC113524843
XR_004577358.1 other downstream 196483 18163546 ~ 18166960 (-) False LOC113524896
TU447895 other downstream 548998 17803260 ~ 17814445 (-) True G377994
TU447860 other downstream 650851 17708000 ~ 17712592 (-) False ubl5
TU447735 other downstream 1095413 17266229 ~ 17268030 (-) True G377862
TU447682 other downstream 1168451 17182732 ~ 17194992 (-) False LOC113525650
TU448264 other upstream 5660 18371581 ~ 18372485 (-) True G378247
TU448303 other upstream 245556 18611477 ~ 18618929 (-) False LOC113524840
TU448328 other upstream 324602 18690523 ~ 18699340 (-) False LOC117596153
TU448331 other upstream 336289 18702210 ~ 18703592 (-) False LOC117596153
TU448405 other upstream 504774 18870695 ~ 18879896 (-) False LOC113524858