RNA id: TU448269


Basic Information

Item Value
RNA id TU448269
length 205
lncRNA type intronic
GC content 0.44
exon number 3
gene id G378252
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 18422617 ~ 18423142 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAACCATGTTACAATATCGGAAGGGAATCCATAATTTTGATATGGAGTGTTTCCAGAAGTACGGCAAGATTTGGGGTATATACGACGCGAGACAGCCGGTCCTCTGCATCATGGACACAGAGATCATCAAAACCGTCCTGATTAAAGAGTGTTACTCTCTCTTCACCAACCGCAGAGtgagatcacacacactcttacacttaat

Function

GO: NA

KEGG:

id description
ko00830 Retinol metabolism
ko00980 Metabolism of xenobiotics by cytochrome P450
ko00982 Drug metabolism - cytochrome P450
ko05204 Chemical carcinogenesis - DNA adducts

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU448249 lncRNA downstream 32444 18387076 ~ 18390173 (-) True G378239
TU448251 lncRNA downstream 47080 18335677 ~ 18375537 (-) True G378241
TU448257 lncRNA downstream 51848 18370282 ~ 18370769 (-) False G378247
TU448215 lncRNA downstream 111961 18310283 ~ 18310656 (-) True G378220
TU448233 lncRNA downstream 113688 18308412 ~ 18308929 (-) True G378232
TU448280 lncRNA upstream 82963 18506105 ~ 18570213 (-) True G378254
TU448291 lncRNA upstream 120529 18543671 ~ 18544156 (-) True G378265
TU448306 lncRNA upstream 186054 18609196 ~ 18610008 (-) True G378274
TU448302 lncRNA upstream 188335 18611477 ~ 18625171 (-) False LOC113524840
TU448311 lncRNA upstream 197673 18620815 ~ 18648389 (-) False ears2
XM_034300407.1 mRNA downstream 17950 18392430 ~ 18404667 (-) True LOC117596188
XM_026911218.2 mRNA downstream 42852 18376579 ~ 18379765 (-) True LOC113524859
XM_026911221.2 mRNA downstream 55105 18366099 ~ 18367512 (-) True LOC113524861
XM_034299916.1 mRNA downstream 56686 18361798 ~ 18365931 (-) True gpank1
XM_034300363.1 mRNA downstream 67542 18340493 ~ 18355075 (-) False LOC113524862
XM_034300409.1 mRNA upstream 28466 18451608 ~ 18471315 (-) False LOC113524843
XM_034300408.1 mRNA upstream 35362 18458504 ~ 18471315 (-) True LOC113524843
XM_026911195.2 mRNA upstream 52256 18475398 ~ 18483881 (-) True LOC113524841
XM_034300411.1 mRNA upstream 69230 18492372 ~ 18496794 (-) True thumpd1
XM_034300198.1 mRNA upstream 111221 18534363 ~ 18540290 (-) True eri2
TU448264 other downstream 50132 18371581 ~ 18372485 (-) True G378247
TU448228 other downstream 56696 18363443 ~ 18365921 (-) False gpank1
TU448229 other downstream 56696 18363443 ~ 18365921 (-) False gpank1
TU448230 other downstream 56696 18363443 ~ 18365921 (-) False gpank1
XR_004577358.1 other downstream 255657 18163546 ~ 18166960 (-) False LOC113524896
TU448303 other upstream 188335 18611477 ~ 18618929 (-) False LOC113524840
TU448328 other upstream 267381 18690523 ~ 18699340 (-) False LOC117596153
TU448331 other upstream 279068 18702210 ~ 18703592 (-) False LOC117596153
TU448405 other upstream 447553 18870695 ~ 18879896 (-) False LOC113524858
TU448416 other upstream 519337 18942479 ~ 18943175 (-) True G378357

Expression Profile