RNA id: TU448328


Basic Information

Item Value
RNA id TU448328
length 638
RNA type TUCP
GC content 0.47
exon number 7
gene id LOC117596153
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 18690049 ~ 18742365 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGGACTCAGAGTTTTCCTGTTACAACCATACAGTCTATATGCACaGCTGTGTGAAGGACACAGTGTCTCCGGTGTTATTCCGACTCAACTTCCACCAGTCTGATCATCAGCCGAACAGCTCCAACTCCATACTCAACATCGACAGCAAGACCACGGCTCATGTAGAGgtTCCCTTTCAGATTAACTGCAAAAACAGGAGCTGTGTATCAGACCTGCAGCTGGACTTTAACTTCTTgaacAGCACATTGCTGGTGGTGGACCAGGCATCTTTTATCATCCATGTGACTCTACTGAATAAAGGAGATGACTCGTTCAACACCAGCGTGGTTCTTTTCTACCCTCCTGGATTATCACTCTCGATATTCAAGACCATTGAGTGGAACAGAAGGACTCTGAGCAGTTGTGGAGATCGTGATGATGGAGCACTGAATAAAACCACCTGCAGTATCAGTTTACCGGTTTATCGCAGAGACACGCGTGCCGTGTTTGAGGGTGTGTTCCGCATCTCACACTCTTACAACTGGACTGACAGCATGCAGATGACACTTGTGGCcagcagtgataACAATGGAAATACAAGTATCACCACAGTGACGAAGACTCTGCCTGTTCAGTTCAATGTAGATGTGGACATCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU448327 lncRNA downstream 6190 18680400 ~ 18684333 (-) False LOC117596152
TU448325 lncRNA downstream 11506 18676810 ~ 18679017 (-) True G378288
TU448311 lncRNA downstream 42134 18620815 ~ 18648389 (-) False ears2
TU448320 lncRNA downstream 48199 18640956 ~ 18642324 (-) True G378284
TU448302 lncRNA downstream 65352 18611477 ~ 18625171 (-) False LOC113524840
TU448336 lncRNA upstream 9932 18709272 ~ 18709642 (-) True G378297
XR_004577308.1 lncRNA upstream 91122 18790462 ~ 18791226 (-) True LOC117596138
TU448378 lncRNA upstream 95003 18794343 ~ 18795164 (-) True G378328
TU448381 lncRNA upstream 95003 18794343 ~ 18827952 (-) False G378328
TU448393 lncRNA upstream 102093 18801433 ~ 18804511 (-) False G378335
XM_034300148.1 mRNA downstream 5268 18680267 ~ 18685255 (-) True LOC117596152
XM_034299919.1 mRNA downstream 42213 18639451 ~ 18648310 (-) True ears2
XM_034300226.1 mRNA downstream 51426 18627935 ~ 18639097 (-) True LOC113524849
XM_034300238.1 mRNA downstream 73734 18611482 ~ 18616789 (-) True LOC113524840
XM_034300237.1 mRNA downstream 73734 18611482 ~ 18616789 (-) False LOC113524840
XM_034300096.1 mRNA upstream 45096 18744436 ~ 18751077 (-) True LOC117595722
XM_034300152.1 mRNA upstream 151946 18851286 ~ 18912617 (-) True LOC113524858
XM_034300316.1 mRNA upstream 605330 19304670 ~ 19313410 (-) True LOC113525404
TU448303 other downstream 71594 18611477 ~ 18618929 (-) False LOC113524840
TU448264 other downstream 318038 18371581 ~ 18372485 (-) True G378247
TU448228 other downstream 324602 18363443 ~ 18365921 (-) False gpank1
TU448229 other downstream 324602 18363443 ~ 18365921 (-) False gpank1
TU448230 other downstream 324602 18363443 ~ 18365921 (-) False gpank1
TU448331 other upstream 2870 18702210 ~ 18703592 (-) False LOC117596153
TU448405 other upstream 171355 18870695 ~ 18879896 (-) False LOC113524858
TU448416 other upstream 243139 18942479 ~ 18943175 (-) True G378357

Expression Profile