RNA id: XM_034300150.1


Basic Information

Item Value
RNA id XM_034300150.1
length 1809
RNA type mRNA
GC content 0.53
exon number 13
gene id LOC113525834
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 18781038 ~ 18822056 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGACACCGTGGATGCGGcgcTCTACTCCAGCAGGCAGGCAGCGGTCAGTAACCCCCTGCTGGACCAGCTGCCCAGTTACCAGTCCCTGCTGTACAGGAGGAAAGCAGAGAGCGGGGTTCAGGACAGGAAATGGGCGTACGGGAGGGGGGGCAGAACGATTCGTGGAGCCACCGAAGACAAACCTGCACGAGAACTTCCGTGGAGCATGGAGGAGAAACGCAAAcacagggagcagcagcacagagagctgGGTGTGTGCTCTCAGTGGAGAGTCAGCGCTCGTCACTATCTGAAGAGGATGAAGGAGGACAGCACAGTGTTtctgaacacactgcagctgtggaggagtgatattcaccttatagagggTATGTTTGGTACAGGGATCCTGTCATACTTCTCGTTCCTGCGCTTCTTGGTTCTGCTGAACTTTGTGATGTTCCTGCTGATGTTCAGTTTTGTCATGCTGCCCATCATCGTGTCCAGACACTCCTCGTCCATCAGCTCCACTCTGACCACAGGGGGCGCTACAGGGGGTCAGTGCAGCGTTTACTCTCGCTCCTCCTCTCAGAAGGGACTCGTCATGTTCCACCAGCACATCATCGACCTGCTGTCTGGCACGggCTTCCTGGAACACACCTACCTGTTCTATGGTTATTATAATGTGGAGTCAGTAAGCTTCTCACACTTCAGCTATAACGTGCCGTTAGCCTACGTGCTCTGCACCATCACCTACCTGCTGCTCAGCCTCATCTGGATCGTCAAGAGgtcaGCTGCAGGCTTTAAGAGGAAGCTGATTCAGGATGAAGATCGGTTCCAGAGTTTTTGTAATAAGATCTTCGCCGGCTGGGATTTCTGTATAACCAATGAGAACGCAGCACGTTTAAAACACAGCAGCCTGCTCTATGAGCTCAAgacggATCTGGAGGAGGAGCGGATCAGGCAGAAGATGGCCGAGCGTTCCCAGAAGGAGAAATGTCGTATCTACTCCCTCCGAGTCGCCCTCAACCTGTTTGTGATCGCCGTGCTCGTCTGCTGCTTCTACTGCATCTACAGTGCCACCATCTTCTCCCAGCAGGCCCAGGCTCAGaatCAGCAGTATACCTTCATAGTGGAGCTGATATTTGAGTATCTGCCCTCCATTGTCATCACACTGGCCAATTTCATCACTCCCATGATcttcagcatcatcatcagctTCGAGGATTACTCTCCTGCCTTCGAGATCCGCTTCACACTCCtcaggtgtgtgtttatgcgtTTGGCCAGTATTGGAGTCCTGCTGTTCTCTCTGTGGTCTCAGATCACCTCCTGCTCCTGGACAGAGGACACAGTGTGTCCCTGTGGATACAACCACACTCTTTACccttgctgggAGACTCATGTAGGCCAGGAGATGTACAAGCTGATGATCTTTGATTTCCTCATCATTGGGGCGGTCACTGTCTTCGTTGAGTTTCCCAGGAAgaTCCTGGTGAATCACTGTGACTTTGGTTTGATAAAGTGGTTGGGTCAGCAGGAGTTCTCCATCCCTCAGAACGTTTTGGAGATCGTCTACGGGCAGACCATCTGCTGGATCGGAACGTTCTACTGCCCCCTGATGCCtgccatcaacaccatcaagTACTTCCTCGTCTTCTACATCAAGAAGGTGACGCTGGTGAATAACTGTCGTCCTGCGTCTCGTCCGTTCCGTGCCAGCAGCTCCAACTTCTTCTTCCTGGCAGTGCTGCTGATTGGATTAGCACTTGCTACACTTCCTGTTACAGTCAGCATTgcacagtgagacacacacacacacccacac

Function

GO: NA

KEGG:

id description
K21988 TMC; transmembrane channel-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU448335 lncRNA upstream 71473 18709289 ~ 18709713 (+) True G378296
TU448190 lncRNA upstream 141361 18639201 ~ 18639825 (+) True G378206
TU448187 lncRNA upstream 149604 18628478 ~ 18631582 (+) True G378203
TU448142 lncRNA upstream 229314 18550863 ~ 18551872 (+) True G378166
TU448134 lncRNA upstream 244853 18535651 ~ 18536333 (+) True G378163
TU448351 lncRNA downstream 127 18804612 ~ 18805264 (+) True G378307
TU448358 lncRNA downstream 29962 18834447 ~ 18837111 (+) True G378313
TU448420 lncRNA downstream 168493 18972978 ~ 18973189 (+) True G378361
TU448426 lncRNA downstream 199259 19003744 ~ 19004045 (+) True G378367
TU448428 lncRNA downstream 200899 19005384 ~ 19005616 (+) True G378369
XM_026911214.2 mRNA upstream 106585 18664087 ~ 18674601 (+) True sp6
XM_034300236.1 mRNA upstream 172309 18602567 ~ 18608877 (+) False cdc37
XM_034300412.1 mRNA upstream 253590 18523161 ~ 18527596 (+) True LOC117596189
XM_034300406.1 mRNA upstream 276446 18498988 ~ 18504740 (+) True LOC113524839
XM_034300415.1 mRNA upstream 390536 18386005 ~ 18390650 (+) False LOC117596190
XM_034300153.1 mRNA downstream 141597 18946082 ~ 19021923 (+) True LOC113529661
XM_034300335.1 mRNA downstream 230026 19034511 ~ 19105679 (+) True LOC113524847
XM_034300336.1 mRNA downstream 230026 19034511 ~ 19105679 (+) False LOC113524847
XM_034300154.1 mRNA downstream 321349 19125834 ~ 19139249 (+) True LOC113525760
XM_034300155.1 mRNA downstream 342043 19146528 ~ 19168611 (+) False LOC113525637
XR_004577335.1 other upstream 171202 18602567 ~ 18609984 (+) True cdc37
TU448141 other upstream 232434 18543671 ~ 18548752 (+) False txndc11
TU448127 other upstream 285143 18494840 ~ 18496043 (+) True G378160
TU448033 other upstream 493876 18282994 ~ 18287310 (+) True G378105
trnak-uuu_20 other upstream 661449 18119665 ~ 18119737 (+) True trnak-uuu_20
TU448412 other downstream 133015 18937500 ~ 18942328 (+) True G378354
TU448413 other downstream 134389 18938874 ~ 18942328 (+) False G378354
TU448417 other downstream 141630 18946115 ~ 18966157 (+) False LOC113529661
TU448438 other downstream 335320 19139805 ~ 19142137 (+) True G378376

Expression Profile