RNA id: TU448412


Basic Information

Item Value
RNA id TU448412
length 895
RNA type TUCP
GC content 0.57
exon number 2
gene id G378354
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 18937500 ~ 18942328 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGAGCAGCTGCGCGCTCGTGCGTGCTTGccgcttcctcttcctcctcttcctcctcctcctgctcctctgcCCTGTGCTGGGGCTCGCGGCCGGCGGCGCGGAGCATGCTGGGGTTTGTCCCAACTTCCTGAACCCTCACCTGTGGGTGGACGCGCAGAGCACGTGCGAGAGGGAGTGCAACACCGACCAGgactGTGCTATCTTTGAAAAATGTTGCACAAATGTGTGTGGTCTGCTCAGCTGTGTTGCTGCTCGTTTCTCAGACGATTCCTCCCCATCCCTTGCTGCTCCTGATGGACAACCAGGTACAAATGTGTCCTCTGTGGGTGGGGCCAGCTGTGATGGCTTCCTTTGcagccagcagggggcagagtgtgtgatgtgggcGGGTCAGCCCGTGTGTAAGTGTCAGGATCACTGTGAGAGTGAGCCCAGCTTCACCTGTGCCTCTGATGGCTTGACGTACTTCAACCGGTGTTACATGGATGCCGAGGCGTGTGTTCAGGGCGTGACACTCACTGTGGTCACATGCCGATATCACCTGTATGCAAGCCCCACCCCATCAGACACCACAGTCCCGCCCACGCCCACTTCCTCTGCCCCTTTCCCCCCTGCTCTCTACTCCAACCCCCAGCACCGGATTGTTTACCTGGGTGGAACTGTCAGCTTCCACTGCGATGTGATTGGACATCCGAAGCCTGACATCACCTGGGAAAAGCAATCAGAGCGTCAAATCATGCGGCCAGATCAGATGTATGGTAATGTCGTAATAACAAACATCGGACAGCTGGTTGTATACAATGCTCAGGTGTTTGACACAGGAATCTACACCTGTGTTGCTCGCAATTCGGTTGGCGTTCTGCGTGCTGATTACCCTCTTTCAGTCATTCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU448358 lncRNA upstream 100389 18834447 ~ 18837111 (+) True G378313
TU448352 lncRNA upstream 103278 18799774 ~ 18834222 (+) False G378308
TU448350 lncRNA upstream 109825 18794095 ~ 18827675 (+) True G378306
TU448351 lncRNA upstream 132236 18804612 ~ 18805264 (+) True G378307
TU448353 lncRNA upstream 133889 18802766 ~ 18803611 (+) True G378308
TU448420 lncRNA downstream 30650 18972978 ~ 18973189 (+) True G378361
TU448426 lncRNA downstream 61416 19003744 ~ 19004045 (+) True G378367
TU448428 lncRNA downstream 63056 19005384 ~ 19005616 (+) True G378369
TU448443 lncRNA downstream 155080 19097408 ~ 19097613 (+) True G378380
TU448436 lncRNA downstream 199377 19141705 ~ 19142137 (+) False G378376
XM_034300150.1 mRNA upstream 133015 18781186 ~ 18804485 (+) True LOC113525834
XM_026911214.2 mRNA upstream 262899 18664087 ~ 18674601 (+) True sp6
XM_034300236.1 mRNA upstream 328623 18602567 ~ 18608877 (+) False cdc37
XM_034300412.1 mRNA upstream 409904 18523161 ~ 18527596 (+) True LOC117596189
XM_034300406.1 mRNA upstream 432760 18498988 ~ 18504740 (+) True LOC113524839
XM_034300153.1 mRNA downstream 3754 18946082 ~ 19021923 (+) True LOC113529661
XM_034300335.1 mRNA downstream 92183 19034511 ~ 19105679 (+) True LOC113524847
XM_034300336.1 mRNA downstream 92183 19034511 ~ 19105679 (+) False LOC113524847
XM_034300154.1 mRNA downstream 183506 19125834 ~ 19139249 (+) True LOC113525760
XM_034300155.1 mRNA downstream 204200 19146528 ~ 19168611 (+) False LOC113525637
TU448343 other upstream 115444 18781038 ~ 18822056 (+) False LOC113525834
XR_004577335.1 other upstream 327516 18602567 ~ 18609984 (+) True cdc37
TU448141 other upstream 388748 18543671 ~ 18548752 (+) False txndc11
TU448127 other upstream 441457 18494840 ~ 18496043 (+) True G378160
TU448033 other upstream 650190 18282994 ~ 18287310 (+) True G378105
TU448417 other downstream 3787 18946115 ~ 18966157 (+) False LOC113529661
TU448438 other downstream 197477 19139805 ~ 19142137 (+) True G378376

Expression Profile