RNA id: TU448426


Basic Information

Item Value
RNA id TU448426
length 302
lncRNA type intronic
GC content 0.38
exon number 1
gene id G378367
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 19003744 ~ 19004045 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tctggattatcaaaatgaatattaaagtctccaacaattaatgccttgtctaaagaaacaaccaggttagagatgaaatccgcaaattcacacaggaattccgaatatggccctgggggtctgtaaataataattactggaatcacctgggtagacttatttttagtggctacgtatgttatgttagaataaagaacttcaaatgcgttgaatttatgactaggtttttgtgtgacggctagattatcattataaatgactgcgacgcctcctcctctgccagttagacggggatgatgtat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU448420 lncRNA upstream 30555 18972978 ~ 18973189 (+) True G378361
TU448358 lncRNA upstream 166633 18834447 ~ 18837111 (+) True G378313
TU448352 lncRNA upstream 169522 18799774 ~ 18834222 (+) False G378308
TU448350 lncRNA upstream 176069 18794095 ~ 18827675 (+) True G378306
TU448428 lncRNA downstream 1339 19005384 ~ 19005616 (+) True G378369
TU448443 lncRNA downstream 93363 19097408 ~ 19097613 (+) True G378380
TU448436 lncRNA downstream 137660 19141705 ~ 19142137 (+) False G378376
TU448434 lncRNA downstream 138636 19142681 ~ 19147032 (+) True LOC113525637
TU448449 lncRNA downstream 144156 19148201 ~ 19152621 (+) False LOC113525637
XM_034300150.1 mRNA upstream 199259 18781186 ~ 18804485 (+) True LOC113525834
XM_026911214.2 mRNA upstream 329143 18664087 ~ 18674601 (+) True sp6
XM_034300236.1 mRNA upstream 394867 18602567 ~ 18608877 (+) False cdc37
XM_034300412.1 mRNA upstream 476148 18523161 ~ 18527596 (+) True LOC117596189
XM_034300406.1 mRNA upstream 499004 18498988 ~ 18504740 (+) True LOC113524839
XM_034300335.1 mRNA downstream 30466 19034511 ~ 19105679 (+) True LOC113524847
XM_034300336.1 mRNA downstream 30466 19034511 ~ 19105679 (+) False LOC113524847
XM_034300154.1 mRNA downstream 121789 19125834 ~ 19139249 (+) True LOC113525760
XM_034300155.1 mRNA downstream 142483 19146528 ~ 19168611 (+) False LOC113525637
XM_026912201.2 mRNA downstream 195982 19200027 ~ 19224919 (+) True LOC113525638
TU448417 other upstream 37587 18946115 ~ 18966157 (+) False LOC113529661
TU448412 other upstream 61416 18937500 ~ 18942328 (+) True G378354
TU448413 other upstream 61416 18938874 ~ 18942328 (+) False G378354
TU448343 other upstream 181688 18781038 ~ 18822056 (+) False LOC113525834
XR_004577335.1 other upstream 393760 18602567 ~ 18609984 (+) True cdc37
TU448438 other downstream 135760 19139805 ~ 19142137 (+) True G378376

Expression Profile