RNA id: TU448434


Basic Information

Item Value
RNA id TU448434
length 2429
lncRNA type sense_over
GC content 0.42
exon number 3
gene id LOC113525637
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 19142681 ~ 19168611 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acacacacacacacacacatatacatacacacacacacacaacacacacactctcttatactcatacacacacactcttacactcatacacacacactcttatactcatccacacacacacacacttacacgtATACAcgcctcttacacacacacacacacacacacacactcttatactcacacacactcttatacactcttatactcatacacacacacacacacacactcttatactcatccacacacacactcttatactcatccacacacacacacacacacactcaccatgaAACATTGTGGTGCCATAAACATTAAGAGCAGCTTCATCAaccagagaacacacacacacacacacacacacacacacactcacacacactcacacacacatttgcataaGCACTAATGTATTCGTGCAGTACTCATacgggatttttaaaaatattttattgttgtttatttttattttttcgtaatgtttattaatgttttattaacgTACGTTGTGTATTTTAATCAGACCTCGTGTTCCATTACGGTCTTTAACGTTCCCTCGTCCACTTCCCCTCCAGAGTGCGCACTCCACCTCAGGAGCAAGAACAACCGACAGCTATAGCTAAAGCCGCTAACATTAGCAGCTTAGCATTAGCGGGTTAGCTCACTGCTAGCGAACTAGCTCACATTAGCCACATGCCTGGCACTTCAGCATCAGCGTCTCCAGCTACATCCTCATCTAACAAAAATTTAGCTAGCCTAGCATGCTAGTTTATGATTAGCATCCTGAAATCTctatttagtgacatcacataCTTGGCTTATATGTAGCTCCGCCCACAGAtcagacattttatacattttaactgAAAGTCTGTTTTAAATAGAAAAGTATGAATTTAGCAAAAATGTTCTGATTTTCCTCACAGTGAAgtttaaacactttatttaagctagctagctaatttatcTTTAGCTACTCCAGTGACCACCCTCAGCGTAACGCTACCTGTCTAGCTGTCTGTTTAATTAGTGTACTACTTAGCATAACCAGCTAGCTATAGCTAATACccattagttagctagctaggtattTATGTTTAGCTAAAAGCTTGTCAGTGgaacagttagctagctaatttattaACAATTTTACTCTATTTAGCTTTAGTTAAATTTTAATGATTGTAGTTGTCTTAAACAGGTGGTCATCTTCATGTCATCGGTGTAGGAGACCATGTGGGTGATTTCAGCCAATAGAATGTGTCCGTGCCTTCAGGGGGGTCGGACACGCCCTCCACACTGGAGTGCTACCTcgctagcatgctaactagcttGATTGCTAACTAAtgaaatatgataataatgagtTAAATTAGTTTCTGTGGtgatttgtataatttattgtCGTTAAACTATGAACTTTGTCGTTAGaactagcttgctaactagctgTCCTACattgctagcatgctaactagctagtggAGTAAATTAGTGCAGCATCATCAGCTGCCACAAAACAGACAATCAAatgttactgtttaaaaaataatatttaagtgcGCATGTTTATGAAAAGCTACATCCACCTTCATGGAAAGGAAACCCCCTACTTCCTGTTCCCTACTTCCTGTTCCCTATTTCCTGTTCCCTTTTTCCTGTTCCCTACTTCCTGTTCCCTACTGTTCCCTTTTTCCTGTTCCCTACTTCCTGTTCCCTACTTCCTGTTCCCTACTGTTCCCTACTTCCTGTTCCCTGCACCggagtgcattatgggtatttgGCCTGGTTTGAACTGTGAGTCCGTTAGTGCACTACTTTCCTCATGACCTCAAAACTCACTAAGTAGTGCACTAAGTAGTGACTACGGTTGAGTTATTCAGTCGTAGgcagcagtgcattctgggtaatgtGTAACATGTGTCTGGTGGCGGGGGAAGCGATCAGCCCCAAGGCAGCGCGGCGCAGCGAGGGGAAGCGCGGCGCAGCGAGGGAAAGTGTGCGAGGGAGTGTTAAAGCCCTGGTTTGGGACGAGGCCGGTGTTTTACTCCTCTCATGCGAAACCGTACAGACCTCAGGAAAACCACGACAACCTCCACAGAGAACACTTTTATACGTCCGAGTCTTTTTCAGCGCAGAACGTAAACGCGTTTATAACTTTTAATAATGGTGtgcacatgaatattaatgatggTATTTTTATGGACGAGGGTTTTAGAGTTTAGAGTCTTAATGCCGCTTTAATTACACGCAGAGGAATCCAGTGGAAACGcttcttcctgtgtctgtgtttgtgttattaatcgcaacatgaatgtgcagctctCTTTTTTATTACGATTATATTGTATTGAGATATTAAAGGCTTCAGTCTCAGTTACTCAGCATGCCTCGAGTGTAAACCTGCATGGAACCTCAGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU448436 lncRNA upstream 544 19141705 ~ 19142137 (+) False G378376
TU448443 lncRNA upstream 45068 19097408 ~ 19097613 (+) True G378380
TU448428 lncRNA upstream 137065 19005384 ~ 19005616 (+) True G378369
TU448426 lncRNA upstream 138636 19003744 ~ 19004045 (+) True G378367
TU448420 lncRNA upstream 169492 18972978 ~ 18973189 (+) True G378361
TU448449 lncRNA downstream 1169 19148201 ~ 19152621 (+) False LOC113525637
TU448447 lncRNA downstream 4871 19151903 ~ 19152621 (+) False LOC113525637
TU448461 lncRNA downstream 22810 19169842 ~ 19170049 (+) True G378387
XM_034300154.1 mRNA upstream 3432 19125834 ~ 19139249 (+) True LOC113525760
XM_034300335.1 mRNA upstream 37002 19034511 ~ 19105679 (+) True LOC113524847
XM_034300336.1 mRNA upstream 37002 19034511 ~ 19105679 (+) False LOC113524847
XM_034300153.1 mRNA upstream 120758 18946082 ~ 19021923 (+) True LOC113529661
XM_034300150.1 mRNA upstream 338196 18781186 ~ 18804485 (+) True LOC113525834
XM_026912201.2 mRNA downstream 52995 19200027 ~ 19224919 (+) True LOC113525638
XM_034300156.1 mRNA downstream 120451 19267483 ~ 19283319 (+) True LOC117596155
TU448438 other upstream 544 19139805 ~ 19142137 (+) True G378376
TU448417 other upstream 176524 18946115 ~ 18966157 (+) False LOC113529661
TU448412 other upstream 200353 18937500 ~ 18942328 (+) True G378354
TU448413 other upstream 200353 18938874 ~ 18942328 (+) False G378354
TU448343 other upstream 320625 18781038 ~ 18822056 (+) False LOC113525834

Expression Profile