Fish Transcriptome and Expression Database

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economic fish

RNA id: TU448461

Basic Information

Item	Value
RNA id	TU448461
length	208
lncRNA type	inter_gene
GC content	0.57
exon number	1
gene id	G378387
representative	True

Chromosome Information

Item	Value
chromosome id	NC_047620.1
NCBI id	CM018566.1
chromosome length	19313417
location	19169842 ~ 19170049 (+)
genome version	GENO_Phyp_1.0_2019_striped_catfish_Genome
species	striped catfish (Pangasianodon hypophthalmus)

Sequence

tccacacagccccaacactccacacagccctaAACACAGTCagaacactccacacagccctaACACTCCACAAAGCCCTAAACACAGCCAGAACACTGCACACAGCCCTAACACAgccccaacactccacacagccctaTCACAgccccaacactccacacagccctaACACAGCCCCAGCACTCCACACAGCCCTAACACAGCCCCA

Function

GO:

id	name	namespace
GO:0016310	phosphorylation	biological_process

KEGG:

id	description
ko00010	Glycolysis / Gluconeogenesis
ko00030	Pentose phosphate pathway
ko00051	Fructose and mannose metabolism
ko00500	Starch and sucrose metabolism
ko00710	Carbon fixation in photosynthetic organisms
ko00680	Methane metabolism

JBrowse2

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

RNA id	RNA type	direction	distance	location	representative	gene id
TU448449	lncRNA	upstream	17221	19148201 ~ 19152621 (+)	False	LOC113525637
TU448447	lncRNA	upstream	17221	19151903 ~ 19152621 (+)	False	LOC113525637
TU448434	lncRNA	upstream	22810	19142681 ~ 19147032 (+)	True	LOC113525637
TU448436	lncRNA	upstream	27705	19141705 ~ 19142137 (+)	False	G378376
TU448443	lncRNA	upstream	72229	19097408 ~ 19097613 (+)	True	G378380
XM_034300155.1	mRNA	upstream	1231	19146528 ~ 19168611 (+)	False	LOC113525637
XM_034300154.1	mRNA	upstream	30593	19125834 ~ 19139249 (+)	True	LOC113525760
XM_034300335.1	mRNA	upstream	64163	19034511 ~ 19105679 (+)	True	LOC113524847
XM_034300336.1	mRNA	upstream	64163	19034511 ~ 19105679 (+)	False	LOC113524847
XM_034300153.1	mRNA	upstream	147919	18946082 ~ 19021923 (+)	True	LOC113529661
XM_026912201.2	mRNA	downstream	29978	19200027 ~ 19224919 (+)	True	LOC113525638
XM_034300156.1	mRNA	downstream	97434	19267483 ~ 19283319 (+)	True	LOC117596155
TU448438	other	upstream	27705	19139805 ~ 19142137 (+)	True	G378376
TU448417	other	upstream	203685	18946115 ~ 18966157 (+)	False	LOC113529661
TU448412	other	upstream	227514	18937500 ~ 18942328 (+)	True	G378354
TU448413	other	upstream	227514	18938874 ~ 18942328 (+)	False	G378354
TU448343	other	upstream	347786	18781038 ~ 18822056 (+)	False	LOC113525834

Expression Profile