RNA id: XM_026912226.2


Basic Information

Item Value
RNA id XM_026912226.2
length 1218
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC113525656
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 17222700 ~ 17224166 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAATTTAACTGCAGTAATTGGTGTGTCCACTAGGAGGTATAGGCAGTGTCTGAAATTGTATACTGTATTGCCCTTTAAGGAATTTAACTTTCAAAtatctgctttaaatattttttggtaaatattctCAAGTAAAAATGTGAAGTTCATAATTACTTTTCCTTTATCTACCTCGtttgtaaaaatttatattatttatttcatgtgatgaggtcacttcctgttagtGCTCCAGGTTCTGCATGAAAACAATGAGACAGACATAGTGTGCTCTCTCTGATAATCCATTGCATCCACTAAAAAGCATCGTAGAGGCAATGCCttttcaccGCAAATGTTAATGAGGAAGAGTGACAGTAAATGAGCAACCTTACTACGACTCTGTTTTCATTGGCTACGGTTTAACTTGGTGTTTAGTCAGAGTTGCAACACACTGCACGAGAACACTACAGTGAAAAGGCACCATTTGATGTTAAAGTGGTTAAGATGGCCACAAGCAGTAAGTCGTCTGTGTGCAGCGCAAGAAGCGGCAAGTCATCCGCATCATCGGTGAGTGCAGCCCATGCCCGGGCCAGAGCTGAAGCCGCCAAAGTGAGAGCATCCTATGCCAGCCAAGAGGCtaaactgaaaatggaaaaggCCACAAGAGAAGCTCAAAATCAGCTGGAAACAGTAAGAATAGACACTGAGTTGGAAGTGTTAACGCTTCAACGAGAAGCTGATGCAGCCGCTGTGGAGGCACAAGTGCTGGAAGATGCTGAATTAGCAATGCATGCTGCAGTTGAAAGAGGAGGATCTGAATCAGAGAAAGTTAAAATTGACCTTACCAGTGAATATGTCAATTCTCAAATCAATCTACAGAGGCATTCTCCCTCTCCACTCTTATCAGCCTTACCTGTTGCTCCTCCATTTCATGCTGACTCACATAACGGCTTCATAACATTGAGTGCACCTGCGAAagacacttcacatacacagtCTATCAACAACAAGCCGAAGTCTGAGAAAGCTGATAGTATGCACTTACCTGCAACAAACCTATCTGATCTGTCTACAGGTGTGACGAAGTCTGAAGTTGGGAGGACCAGCCCCATCATGAACGCACATGCTAAACCTTATGTTGCTCGATACATTCCTCCAGCTAGCATGCCACCTCAGGCAGAGCCTTTGGCACAGTATTTAGCACGGCGAGACCTCATTAGTTCAGGACTGTACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU447299 lncRNA upstream 20082 17182776 ~ 17202618 (+) True G377529
TU447297 lncRNA upstream 47596 17172237 ~ 17175104 (+) False LOC113525655
TU447240 lncRNA upstream 114030 17108459 ~ 17108670 (+) True G377499
TU447233 lncRNA upstream 121277 17101208 ~ 17101423 (+) False LOC113537672
TU447230 lncRNA upstream 124818 17097681 ~ 17097882 (+) False LOC113537672
TU447343 lncRNA downstream 92394 17316560 ~ 17316971 (+) True G377569
TU447382 lncRNA downstream 191238 17415404 ~ 17427856 (+) True G377604
TU447424 lncRNA downstream 342640 17566806 ~ 17568970 (+) False LOC113526395
TU447429 lncRNA downstream 344894 17569060 ~ 17569467 (+) False LOC113526395
TU447431 lncRNA downstream 350595 17574761 ~ 17585043 (+) True G377644
XM_034299904.1 mRNA upstream 47617 17156898 ~ 17175083 (+) True LOC113525655
XM_034299938.1 mRNA upstream 50554 17167068 ~ 17172146 (+) True LOC117596117
XM_034299939.1 mRNA upstream 50554 17167068 ~ 17172146 (+) False LOC117596117
XM_034300011.1 mRNA upstream 66327 17150751 ~ 17156373 (+) True LOC113525652
XM_034300012.1 mRNA upstream 66327 17150751 ~ 17156373 (+) False LOC113525652
XM_034300101.1 mRNA downstream 11429 17235595 ~ 17254121 (+) True LOC117596139
XM_034300102.1 mRNA downstream 11429 17235595 ~ 17254121 (+) False LOC117596139
XM_034300123.1 mRNA downstream 20602 17244768 ~ 17249333 (+) True LOC117596142
XM_026913774.2 mRNA downstream 30911 17255077 ~ 17262224 (+) True LOC113526590
XM_034300119.1 mRNA downstream 31734 17255900 ~ 17262224 (+) False LOC113526590
XR_004577315.1 other upstream 367684 16822550 ~ 16855016 (+) False b3gntl1
TU446960 other upstream 658184 16561383 ~ 16564516 (+) True G377269
TU446758 other upstream 878076 16340768 ~ 16344624 (+) False G377132
XR_004577301.1 other upstream 906315 16290730 ~ 16316385 (+) False LOC113537689
TU447578 other downstream 831458 18055624 ~ 18056805 (+) True G377747
TU447579 other downstream 838252 18062418 ~ 18068946 (+) True G377748
TU447580 other downstream 838252 18062418 ~ 18068946 (+) False G377748
TU447581 other downstream 838252 18062418 ~ 18068946 (+) False G377748
trnak-uuu_20 other downstream 895499 18119665 ~ 18119737 (+) True trnak-uuu_20

Expression Profile