RNA id: XM_026913524.2


Basic Information

Item Value
RNA id XM_026913524.2
length 1697
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC113526467
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 17513585 ~ 17525427 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGTGCAGGCAGGCTGAGTGTACTGTGGACCTGAAGCACAAGGAAAACACAGCGGAGAGCAACAGGATTAAACGACAAGAAAACACGgggaaacaaacacaaaaataaacgcGAGTAGGCCTGAAGTGTTACCGCACTGGAAACCAGAACGATCTGACGATGAGTGGCTGAACTTTATATACACGGCTGATTGGTGAGCTGATGATGAACACATGTGTTGAATGATTCCATCGGGGGAGACGTGGAGAGCCTCCAGCCCGCCGCCCGGCAGCGCAGCAGGTGCTTGGACGGCTTCCTGCTCGGCTCCGTTATCACGCTGTTCGTCATGGTGCTGTGCGGAGCCGCGCTCGGGGTCTGGGTCGTTAGAGACCTGCGCGCGGAGATGAAGCACGTGCCCCACATGCCCGCGGGCGTCCCGAGCGCCCTGAATCAAGAGCGTCCACCTCACATCGGCGCGTCCTACAAGGTGGAAAATTTTGCCTACCTTACCGCCATCACCAGTAAGCTGGAAAACAAGACTATGCAGTGGGCGCCAATCAAGTACGGAAACACCAGCACCGTAGGCTCAAGCTACAGCTATGACTCAAACGGAGCACTGAGGGTGCTGAAGGATGGGACCTACTTCCTGTACACCCAGCTGAACCTGACATGCGTTGGTCCTTGTGATGATGGATCCCTCACCGTCACCTTCGAGGACGATCTGAAAAACGTGCAGCTGTCCTGCACACTTCCCCTTCGCAAGGCGCATCGTAGCCCTACAGCGGAAAAGTGTTGGACTGTGATCCCTCGTCTTTCAGGCAAACACCGACTGCTGGCCAGGATGCACACCACAGTGTCAGCACAAAGATGGAGTCTCGATCTTAACTACTCCGGATTTGGCATGTTCCTGGTGGACGGGTCCTAGACAGAGTAGACGATGGGACAGACATTTTCAGCATCAAAGAGACACTGAGTTTGAGCCTTACGTATGTAACTGTATGCTATCACAGGGTGCTGACTCAAACCATGCTTGAAGAGACCACAAGGGTCCTCATTTTTGCACTTTTAGAAATGCGCTGATATTAAACATACTTCTATATTGCGATGGCGTCTTATTAGCACGATACTGTACCTTTTTTGACGGATCTCATATCTgaaaaacagaattatgggatttcCTTTACAGAGGACCTTCAAATTCATCCAATTATGGACATTTCTAACCCAAAGCTGTAAAAGTACTGATGATTTGAAGCTTCCACAATAACAGTATTATGCATCCTGGATATCGCGGTATATTGTACAATCAATGCTGCTTACTCAGGAAGAACTTTCACGAAGcactatttataatttttatattatcataatctatttatatactgtttgtacatatgtatttttattgtttagatatttatgttatttgttGCAAAACTGTTGTACTGTAAGACAGTGGGTAATTTTTACTGTTACACAGTAGCTGAAGAGTAGACGTCACTACAGACTACAGCCACAAAGGTGGCTAATGGCAGGCACAAAGCGCTAGTCACAACTTACTAAGTGCCTTGAAATAGGAGCACAGGCGTCCTGTATGTGTCTCCATCACAACGTGGCGAAAAGTAATGTCTCTCTGACAGAGACCGTGGAGGTGATTGTTAAATTATATTCAGGAATGTAATGCTAATATGTAGAAAATAAAAGGGACTTTACTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU447382 lncRNA upstream 85729 17415404 ~ 17427856 (+) True G377604
TU447343 lncRNA upstream 196614 17316560 ~ 17316971 (+) True G377569
TU447299 lncRNA upstream 310967 17182776 ~ 17202618 (+) True G377529
TU447297 lncRNA upstream 338481 17172237 ~ 17175104 (+) False LOC113525655
TU447240 lncRNA upstream 404915 17108459 ~ 17108670 (+) True G377499
TU447424 lncRNA downstream 41379 17566806 ~ 17568970 (+) False LOC113526395
TU447429 lncRNA downstream 43633 17569060 ~ 17569467 (+) False LOC113526395
TU447431 lncRNA downstream 49334 17574761 ~ 17585043 (+) True G377644
TU447439 lncRNA downstream 69661 17595088 ~ 17599934 (+) True G377652
XR_004577311.1 lncRNA downstream 176241 17701668 ~ 17702743 (+) True LOC117596150
XM_034300097.1 mRNA upstream 18774 17451592 ~ 17494811 (+) True LOC113526593
XM_034300099.1 mRNA upstream 18774 17451592 ~ 17494811 (+) False LOC113526593
XM_034300098.1 mRNA upstream 18774 17451592 ~ 17494811 (+) False LOC113526593
XM_026913875.2 mRNA upstream 72243 17431213 ~ 17441342 (+) True LOC113526628
XM_034300100.1 mRNA upstream 72243 17431213 ~ 17441342 (+) False LOC113526628
XM_026913797.2 mRNA downstream 26573 17552000 ~ 17558053 (+) True tmed1b
XM_034299907.1 mRNA downstream 36018 17561445 ~ 17569232 (+) True LOC113526395
XM_034300103.1 mRNA downstream 63206 17588633 ~ 17612874 (+) True dnm2b
XM_034300104.1 mRNA downstream 63206 17588633 ~ 17612874 (+) False dnm2b
XM_034299908.1 mRNA downstream 132251 17657678 ~ 17684129 (+) True LOC113525128
XR_004577315.1 other upstream 658569 16822550 ~ 16855016 (+) False b3gntl1
TU446960 other upstream 949069 16561383 ~ 16564516 (+) True G377269
TU446758 other upstream 1168961 16340768 ~ 16344624 (+) False G377132
XR_004577301.1 other upstream 1197200 16290730 ~ 16316385 (+) False LOC113537689
TU447578 other downstream 530197 18055624 ~ 18056805 (+) True G377747
TU447579 other downstream 536991 18062418 ~ 18068946 (+) True G377748
TU447580 other downstream 536991 18062418 ~ 18068946 (+) False G377748
TU447581 other downstream 536991 18062418 ~ 18068946 (+) False G377748
trnak-uuu_20 other downstream 594238 18119665 ~ 18119737 (+) True trnak-uuu_20

Expression Profile