RNA id: XM_026913552.2


Basic Information

Item Value
RNA id XM_026913552.2
length 1547
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC113526483
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 17340508 ~ 17345865 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCAGTGACAGAGGCAGTTGTGCACAGTGATGACTTATAAAATAACAGCtcctttaatatatttataaattcattATGAAGATCCTCCACATCTTCATCCTCTGCCTGATCACAGTGAGGACTTTGGCCAATAGAACAGTGACTGCCTACACAGGGGGAGGAATCAACATCGAGTGCAGCTATAAAGAtgtacacaaaaacaaaataaaatccttCTGTAAGATAGGAACACAGCAGAGGTGTTTGGatcaaataaacacagaagCACACACGGAATGGACCCATAAGGGCAAGTTCTCGATTCAAGACCGCAGAAGTGAGGGAATCTTCAGAGTGTTGATCAGAGAGCTGACCGTGGAGGACACTGGAATATACAGATGTGCTGTTGCTGGCTCTGATCCAATGTCCACCTCCACAGTAGTGAACCTGAAAGTCACAGAAGATCTCTCCTATGAGAAGGCCATCAGTAAGACTGGCCGTGTAGGAGGAGATATAAACATCAACTGTAGATACCCAAACTCCTACAGGAGTGAGCCTAAGTTTTTCTGCAAGATGTTGCACAATGGTGTTTGTACTTATAAAAAAGATGGTAGAGAAGCTgtgaaagaacagaaaatctCTCAGCACGATGATCAAGCAAAGCAAGTGTTCACTGTCAGCATGAAGCGTGTGAGCGAGCAGAACTCGGGTGAATACTGGTGTGGAGTAGAAGCAACCGGGGAATCTGAACATGGATACAAGGTCTACATCACACGCATCAACATAGCGATTACCGATCCAAGTGTTCCAGTTTCAAAGCGACCTTCATccttgtcatcatcatcatcatcatcaacatcatcaacaagCACATATCTACTTCTCCCAACATCTCATCCTACGCCATCTTCTCTTCTGACTGGAACTCCAGGTTTCATCATCATGTCTGTAATTCTGCCAGTGCTTCTGGTTCTTCTGATCTCATTTCTCACCGTGACTTTCTGCAGGAGAATGGTCCCAATTCCAAGAACCATCCATGAGGTTCCCTCTGCTGGCACCAGACGCCTTCCTAACACACTTTCCTCCACTGTTcaattacccacaatccctgctGATTCTTCACATCCTGATTATGTCAACACTCGACTACCCACAATTCCCTCAGATTTTTCACATACTGTTTATGCTACAGCACAACTACCATCACTTGCTCCTGATCAGTATGTCTGCTCCACGGCTTAGTTACCCAAAATTCTCTCTGACGCCTCAGTCAGTGCTGCTCTGCTGCTGGGTGTGAAATCTGGTGAAAGTCCAACATACGCAGCAGTGAGTTTTGATACCAGTTCTAATGATGCAGCTCTAACAGTGATCTACAAGGACGAGTGTGACAATGCTACTGTTAACGTCACTGGGTATAGATAGTTCTTCATTCCTTCttcattctttgtttttaatctatttGAGATGTTATTAAATGTAGAGTACTAGCTGTGTCTGCCTTTGAGATTGCTAGATTGTTGCATTGTTAGACTTTTAATAAACTAATCTTGTATGAGctactgataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU447766 lncRNA downstream 1837 17338287 ~ 17338671 (-) False LOC113526761
TU447757 lncRNA downstream 2860 17320651 ~ 17337648 (-) True G377877
TU447754 lncRNA downstream 23528 17316551 ~ 17316980 (-) True G377874
TU447707 lncRNA downstream 86793 17241835 ~ 17253715 (-) True G377847
XR_004577336.1 lncRNA downstream 262347 17068536 ~ 17078161 (-) True LOC117596165
TU447776 lncRNA upstream 35316 17381181 ~ 17381602 (-) True G377892
TU447801 lncRNA upstream 123090 17468955 ~ 17560120 (-) True G377916
TU447836 lncRNA upstream 225195 17571060 ~ 17573894 (-) False LOC117596149
XR_004577310.1 lncRNA upstream 225200 17571065 ~ 17573884 (-) True LOC117596149
TU447873 lncRNA upstream 342226 17688091 ~ 17694412 (-) True G377979
XM_026914087.2 mRNA downstream 1702 17333296 ~ 17338806 (-) False LOC113526761
XM_026914086.2 mRNA downstream 1702 17333296 ~ 17338806 (-) True LOC113526761
XM_034300125.1 mRNA downstream 18362 17317702 ~ 17322146 (-) True LOC117596143
XM_034300124.1 mRNA downstream 18362 17320222 ~ 17322146 (-) False LOC117596143
XM_026914469.2 mRNA downstream 42281 17281564 ~ 17298227 (-) True colgalt1b
XM_026913907.2 mRNA upstream 14209 17360074 ~ 17383012 (-) False LOC113526656
XM_026913906.2 mRNA upstream 14209 17360074 ~ 17383012 (-) True LOC113526656
XM_034300118.1 mRNA upstream 60243 17406108 ~ 17427875 (-) False LOC113526629
XM_034300117.1 mRNA upstream 60243 17406108 ~ 17427875 (-) True LOC113526629
XM_034300137.1 mRNA upstream 188569 17534434 ~ 17551966 (-) False LOC113526599
TU447735 other downstream 72478 17266229 ~ 17268030 (-) True G377862
TU447682 other downstream 145516 17182732 ~ 17194992 (-) False LOC113525650
TU447143 other downstream 488845 16845012 ~ 16851663 (-) True G377416
TU447144 other downstream 494906 16845012 ~ 16845602 (-) False G377416
XR_004577334.1 other downstream 865077 16425454 ~ 16475431 (-) False LOC113537389
TU447860 other upstream 362135 17708000 ~ 17712592 (-) False ubl5
TU447895 other upstream 457395 17803260 ~ 17814445 (-) True G377994
XR_004577358.1 other upstream 817681 18163546 ~ 18166960 (-) False LOC113524896
TU448228 other upstream 1017578 18363443 ~ 18365921 (-) False gpank1
TU448229 other upstream 1017578 18363443 ~ 18365921 (-) False gpank1

Expression Profile