RNA id: XM_026913875.2


Basic Information

Item Value
RNA id XM_026913875.2
length 3498
RNA type mRNA
GC content 0.43
exon number 9
gene id LOC113526628
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 17431213 ~ 17441342 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgtgtcgtattAACTCTCAATagataaaattgttttttgGAAGTCTTCTCCTGCTGAAGGTTTGAAGAGCAATCCCAAAGGAGTAATGTAAGATGGAGACACTGCTAAAAGCTTTGGATGATCTCACAGAAAAAGAGCTGCACAGATTTCAGTGGTTTCTAACTACAGACAATGTATTGGAGGGTTTCCCACCCATCCCAAGGAGCAAGCTGGAGAATGCTAATCGACATGACACTGTGACCAAGATGATGGACAGTTATGGTCATTTTGGAGCTGAGAAGGTCACACTGACCATCCTGAAGAAGTTGAACCACAACCATCTGGCTGAGATGCTGGGAAGCAAACTTGCTCAAGGAAGACTTGAAAAAGAAACAGTTACTGTTCCAGCAGCATTGTCCTCTCTTCATCCACCCTTTCAGACTATTAACATCTCGTCTACTTCCATCTCAGAGTGTCAAGTCTCGGGCAACCAGTTAAAGGAAGAACTGGTCCAAAAATCTGAACGCATCCTGGATGGAGATTCAGAGACTGGTCACAAAAAGTACCTGAACGATATCTATACAGATCTCTACATAGTGGAGAATGAGACAGGAGGAGTTATTGAGGAGCATGAGGTGAGGCAGATTGAGGCATCGTCCAACATACCTGCCGGGGAGGAAATTCCAATCAAGTGCAATGACATTTTCAAACTGCAGGCTAATACGAACCGACGTAACAGAAAAGTGTTAACAATGGGGATCGCAGGAATCGGTAAAACCTTCTCAATCACCAAATTTATACTTGACTGGGCTGAGGGAAAGGAGAACCAAGACATTGAGTTTATTTTTCCTCTCCCTTTCCGTGAGCTGAACATGAAGAAAGATGAACAATTCAGCCTGATGGAACTGCTTTATGAATTTGTCTTACATTCTAATGAGCTCAAGTCGCTTCCTTTGGGTGATGGAAAAGTCATGTTCATTTTTGACGGGCTCGACGAGTGCCGCTTCAGTTTGAACTTTGATGACACTGAGAGACTAAAggacatttacaaaaaaacatcactgaGCTCAATAATCACAAACCTCATCAAAAGAAacctgcttccctctgctctcatATGGATAACCTCCCGACCTGCTGCAGCTCATCTTATACCTCGAGACTACATTGACCAGGTGACAGAAGTGCGAGGATTTAACAATGAGCAGCGGAAAGAATACTTCTACAAACATTGTCAAAAGGAATTAGCTGCAAAAATAGTCACACACATCATGAAATCAAggagcctctacatcatgtgtcAAATTCCAATCTTCTGCTGGATCTCTGCTTCTGTGCTTAAGACTCTGCTTGAAAATGAGGAGGATACCCCCACAACTCTAACTGGGATGTACACAAAATTTGTTCTTCAGCAGTCTTAcaacatgaaaaagaaatactGCGAAAAAACCTCAAAGCTTTTCAATTCTGAAAAAGTGATCCTGCAGCTTGGAAAATTGGCTCTGCATAACCTTGAGAGAGGTGACCTGATATTCTATGAGGAAGATCTTAAGAAATGTGGGATTGATATCAGTTTTGGTTTGGTGTACTCAGGTGTGTGCACTCAGATCTTCAGTCAGAACCAAAGTGCCTCTGGTAGAAAGACCTTTAGCTTTGTCCATCTGAGCATTCAGGAGTTCTTCGCAGCTTTGTACGTCCTTCACTCACACTGCAAAGGCATAAAAAGTAATGCACTTCAGCCAAGAACCTTGACAAACATCATTAAGTGGGTAAACAAGACAACTGCTGACCTTCAACAGTATGCTCTTTCTAAAGCCTTAACGAGTGAGAATGGCCACATGGACCTTTTTGTACGTTTCCTTTTCGGCCTTTCTGTGGAAACCAACCAGCACGACCTGAGGGAACTCCTGCCCAAACTGAAGACAGAGGTGAAACCAAAGGACAGGAGGCAGATAGTTTATTTCATCCAGGATAACCTAAACAGCAATATCTCAATAGCTGCAAGCCTCAATCTCCTAGAATGTTTAAGAGAAATGAAAGATGACTCCCTTCTGTCTGAGAAATTCAACAAATATTCACCTTTACATTCAGTGAGTTTCACAGGAGTTCAGTGGTCACTTTTGGTGTACAATTTGCTGAATTCAGAGGAAATTCAAGAGAAATTTGACCTCAAGCAACATGCACAATCATCTAAGGGACTTAGAAGACTGCTGCCAGTGGTAAAAATTACCAAACAAGCTCAGCTGGATAACTGCAACCTAAAGAAAAAAGCCTGCAAAGATTTGGCATCAGTCTTCAGTGCTGATTCACCCTTGCGAGAGCTGGACCTGTGTGAGAATGATATACAGGATACAGGAATGGAGCTGCTCTCTGTTGGACTGAGAAGCAtgcactgtaaactggagatactgagGATGTGTTACTGTAAGCTCACAGAAAAAAGCGGAGAAGTCTTGGCATCAGTTTTCACTTCAGCATCTTCACGCCTGAGAGAGCTGGACGTCAGCAACAACAACCTGCAGGACTCAGGAGTGAAATTTATCTCTATCGGATTGGaaaatccacactgtaaactggaaaTACTGAGACTTTCTGGCTGTTTAGTCACAAAGGAAGGCTGTTCTTATCTGGCTTCATCTCTGAGATCAAACTCCTCGTCACACCTCATATATCTTGATCTGAGCTACAATCATCCAGGAGATACAGGAGAGGAGATGTTCTATGATCTACTGCATAATCCACACTGGAAACTGGAGACAGTCAAaaTGGCTCATGGAGGGGAAATCAGAATGAAACCAGGGCGACTAAAATATGCCTGTGATCTCACACTGGATCCAAACACAGCAAACCGAAAGCTCCAgctgtataataattataaatgtgtgAAACCAATATGGACTCATAACCTCACATTGAGGAAGTATCATCATCCAGACAGATTTGATGACTGGCCACAAGTCCTATGTAAACAGCCTCTGTCTGGACGCTGTTATTGGGAGGCGACTTGCAGTGGTGGGACTGCTATCATTGCAGTGTCATATAAACGAATCAAAAGAAAGGAattaaattcatgttttggaAAGAATGACGTGTCCTGGTGTCTGATCTGCACTCCTGAAGGTTATAGCGTCGTTCACAATAATCGTACCACACACATTCCCAAACCCGTCAACATGGGGTCTGAAACACTGGGCATGTACCTGGACTCAGAGGCTGGAACACTGTCTTTCTACACCTACATCAGTAATACACGAATGCTTCTGCACCGGCTCCACGTCAAATTCACTGAACCCCTTTACGCAGGGTTTGCATGTGATGTACATATTCCTCCAGTCATACACCAACCAGCCAACTACATTAAAATCAATGACAGGTTTACTGAATAACACGGATTATATTGTTACAGGGaaatattaggcagcaagtgaacactAAGTTGAGCAAGCATAAGCATGGGATTAGTGGACCACTAatcagtggaagaaggtggcctggtctgatgaatcacattttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU447382 lncRNA upstream 3357 17415404 ~ 17427856 (+) True G377604
TU447343 lncRNA upstream 114242 17316560 ~ 17316971 (+) True G377569
TU447299 lncRNA upstream 228595 17182776 ~ 17202618 (+) True G377529
TU447297 lncRNA upstream 256109 17172237 ~ 17175104 (+) False LOC113525655
TU447240 lncRNA upstream 322543 17108459 ~ 17108670 (+) True G377499
TU447424 lncRNA downstream 125464 17566806 ~ 17568970 (+) False LOC113526395
TU447429 lncRNA downstream 127718 17569060 ~ 17569467 (+) False LOC113526395
TU447431 lncRNA downstream 133419 17574761 ~ 17585043 (+) True G377644
TU447439 lncRNA downstream 153746 17595088 ~ 17599934 (+) True G377652
XR_004577311.1 lncRNA downstream 260326 17701668 ~ 17702743 (+) True LOC117596150
XM_034300115.1 mRNA upstream 71349 17352959 ~ 17359864 (+) True LOC113526484
XM_034299906.1 mRNA upstream 80340 17348953 ~ 17350873 (+) True LOC113526630
XM_026914085.2 mRNA upstream 110853 17307615 ~ 17320360 (+) True LOC113526760
XM_026914084.2 mRNA upstream 117575 17307615 ~ 17313638 (+) False LOC113526760
XM_026914153.2 mRNA upstream 124943 17300942 ~ 17306270 (+) False LOC113526801
XM_034300097.1 mRNA downstream 10250 17451592 ~ 17494811 (+) True LOC113526593
XM_034300099.1 mRNA downstream 10250 17451592 ~ 17494811 (+) False LOC113526593
XM_034300098.1 mRNA downstream 10250 17451592 ~ 17494811 (+) False LOC113526593
XM_026913524.2 mRNA downstream 72243 17513585 ~ 17525427 (+) False LOC113526467
XM_026913523.2 mRNA downstream 79920 17521262 ~ 17525427 (+) True LOC113526467
XR_004577315.1 other upstream 576197 16822550 ~ 16855016 (+) False b3gntl1
TU446960 other upstream 866697 16561383 ~ 16564516 (+) True G377269
TU446758 other upstream 1086589 16340768 ~ 16344624 (+) False G377132
XR_004577301.1 other upstream 1114828 16290730 ~ 16316385 (+) False LOC113537689
TU447578 other downstream 614282 18055624 ~ 18056805 (+) True G377747
TU447579 other downstream 621076 18062418 ~ 18068946 (+) True G377748
TU447580 other downstream 621076 18062418 ~ 18068946 (+) False G377748
TU447581 other downstream 621076 18062418 ~ 18068946 (+) False G377748
trnak-uuu_20 other downstream 678323 18119665 ~ 18119737 (+) True trnak-uuu_20

Expression Profile