RNA id: XM_026914152.2


Basic Information

Item Value
RNA id XM_026914152.2
length 1907
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC113526801
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 17300942 ~ 17306270 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacactctccatgGCGTTCTCTCTAGAAGAAGATCTCTCCCGTCCAGTGAGTTTAGAGCTTCATCAGGATCCTCAGCTCCTCTTCTGTGGACACTGTGGAGTTGTTGGATATCACCACGCTGTTTTCTGCTCGTTTTGCTCTCCAACATGTCCTGTGTGTCACCAGGAATCCCTGACCAGCCTGGCTCTGAGGAACACCTGTGAGTCCTATCAGAGGgagaaggagatggagagagaagacAGGGAGGAAGACGGAGGGATTCGATGTCCATTGCACAGAGAGAAAATCCTGTTTTTCTGCAAGAACGATGAAGAGGCCATATGTTCTCAGTGCAGAAAACAGAGTCACATATCACACAGAGTTCAgccttttacacacactgtatacgaGCGAAAGGACCAAATCAAAGCAGCTGTCCGTCCAGCCGAGAAAGTTCTGGAGTCTTTAAGGAACGGCACAGCACTGGAGCGTAAAATCACCAAATACATTGAGtCTCAGGCTGAGCAGACGGAGAAGCAGATAAAGGAGGAGTTTGAGAAGCTTCATCAGTTCCtcagagaggaggaagaggtcAGGAGAGCTGCActgagggaggaagaggaggagaagaaagaaaaactggaAAGATGGATTGAACAAGAGTTACAGTCCCTCTCGGATAGATTGATGGAGGTGGAAGAAGAGCTGGAGAATGATGATGTCACATTCCTGTCgaacTTTGACCATATTATGACACGGGCTCGGTACAGACGGTCAGATCCACAGCTGAACTCAGGATCTCTGATCGATGTGGCCAAACACGTGGGAAATCTGAGATTCAGAGTGTGGGAGAAGATGAAAGATCTTTGTCCTTACTACCCGGTAGTCCTCAACCCGAACTCCTCCCACATGTCTGTGTCTGGTgatctggtgtgtgtgagacactccGTTCGCAGATTTTACTCCCCCAACCCCCTACAGAAGAATGCTAACCATTTGGTTCTTGGTTCGGAGGCCCAAAATGCCAGCTTCAACTGCTGGGATGTGGAGGTGGGAGACAGCAAGCACTGGACCCTGGGTGTGTGTCGACGCTCGGCGGCCGAGAGAAACCTCACACAACCTTTGATCTCTCAAAATAGGTTTTGGGGTCTCAGCAGAAATGGAGATTTCTATGATGTCTTGTGGTCCACAGAGGCTCCGTTTCGGTTAAGGAGGCCTCCGAAAACGGTGCGGGTGAAGTTGATACAACGTTTCGATCTCAACAACTGGAAACTTTACTGGATGCTGAGATTTTTAGATGCTAGCAATGAATCTGTGATCGCCTGTATTCGTGATATAGCATTTGGGAGGGATTTCATTCCCTTTTTGATCCCAGAGGAGAGAAATGCTCCTCTGCGCATTGttcctgtaaatgtaaacatgacCATGGAGAAGAAATTCAGCTTCTTAGAGAGGCACATGGACATGATACCTTTATATGTAATTGGATTCCTCATGGTGCTTTTGGTGTGTTTGGTGATGATATTGGTAAAAATACACTAGGAAAGTGAAAATCAGAGAGTTGTTTGGGTTGCATTTCAAGAAGCACCTTATAAGAATATATTGAAATAATCAAGTTAACAAGAATAGCATGCTTCTAGATCCATATGATAAAAAGCAGGAGCTTAGTACAGATAGATAAAAGTGCAGAAAGTTCAACAAGTGTAAGACAGATCAGCCACAGTTTAGTTATAAGTAAGCATAACAGAACCAGAGAATGTGGGTAATGATGAGAGAGTAATTTTGTATAATGGTGCCGATCACAGGAAATTGCATGAGAGTAAAGCACTTAAATTTCATAACCGAATTCTGTTTTCTGAAAAATCATGctggaaataatgaaataatgtggtgtaataaaactgttgattttaaaatatgaaa

Function

GO:

id name namespace
GO:0046980 tapasin binding molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation
ko05168 Herpes simplex virus 1 infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU447299 lncRNA upstream 98536 17182776 ~ 17202618 (+) True G377529
TU447297 lncRNA upstream 126050 17172237 ~ 17175104 (+) False LOC113525655
TU447240 lncRNA upstream 192484 17108459 ~ 17108670 (+) True G377499
TU447233 lncRNA upstream 199731 17101208 ~ 17101423 (+) False LOC113537672
TU447230 lncRNA upstream 203272 17097681 ~ 17097882 (+) False LOC113537672
TU447343 lncRNA downstream 10290 17316560 ~ 17316971 (+) True G377569
TU447382 lncRNA downstream 109134 17415404 ~ 17427856 (+) True G377604
TU447424 lncRNA downstream 260536 17566806 ~ 17568970 (+) False LOC113526395
TU447429 lncRNA downstream 262790 17569060 ~ 17569467 (+) False LOC113526395
TU447431 lncRNA downstream 268491 17574761 ~ 17585043 (+) True G377644
XM_026913774.2 mRNA upstream 38930 17255077 ~ 17262224 (+) True LOC113526590
XM_034300119.1 mRNA upstream 38930 17255900 ~ 17262224 (+) False LOC113526590
XM_034300101.1 mRNA upstream 47033 17235595 ~ 17254121 (+) True LOC117596139
XM_026914085.2 mRNA downstream 1345 17307615 ~ 17320360 (+) True LOC113526760
XM_026914084.2 mRNA downstream 1345 17307615 ~ 17313638 (+) False LOC113526760
XM_034299906.1 mRNA downstream 42683 17348953 ~ 17350873 (+) True LOC113526630
XM_034300115.1 mRNA downstream 46689 17352959 ~ 17359864 (+) True LOC113526484
XM_026913875.2 mRNA downstream 124943 17431213 ~ 17441342 (+) True LOC113526628
XR_004577315.1 other upstream 446138 16822550 ~ 16855016 (+) False b3gntl1
TU446960 other upstream 736638 16561383 ~ 16564516 (+) True G377269
TU446758 other upstream 956530 16340768 ~ 16344624 (+) False G377132
XR_004577301.1 other upstream 984769 16290730 ~ 16316385 (+) False LOC113537689
TU447578 other downstream 749354 18055624 ~ 18056805 (+) True G377747
TU447579 other downstream 756148 18062418 ~ 18068946 (+) True G377748
TU447580 other downstream 756148 18062418 ~ 18068946 (+) False G377748
TU447581 other downstream 756148 18062418 ~ 18068946 (+) False G377748
trnak-uuu_20 other downstream 813395 18119665 ~ 18119737 (+) True trnak-uuu_20

Expression Profile