RNA id: XM_026914469.2


Basic Information

Item Value
RNA id XM_026914469.2
length 4455
RNA type mRNA
GC content 0.44
exon number 12
gene id colgalt1b
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 17281564 ~ 17298227 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGTAGTGTGTAACTATCTGCTTTATTGTAGTGATACGTGTTGTTGTGCAGTGTGATGTAGATATAAGTGTAGCATTTTGGTGATGAAtgaaaatgttgaataaacgtTTCCCCTTTACATGTCTGTCTTCGCTTCTGactgtgcgcatgcgcagagaaACGGCACAGTGATCAGGGTGTTGCTTTAATATCGCTTGGCGGTATATCGGGGTAAAGATAGTGGGAGGACCCCGGTGTCGGTGCTGGTGTCGGTGCGTTCTGCAGTGTGGAGGCTCGCCATGCACCGGGGCGCGCTGCTGCTCTCCGCCGCCTCGGCGCTGCTCGTGCTCGGCCCGGGTTTGGGGTATTTCCCGGAGGAGCGCTGGAGCCCCGAGTCTCCTCTGCTGGCTCCGCGCGTGCTGCTCGCGCTGGTGTGCCGCAACTCCGCGCACTCTCTCCCGCATGTCCTGGGCGCCATCGACCGCCTCCACTACCCCAAGGAGCGCATCGCTGTGTGGGTGGCGACGGACCACAATGTGGACAACACGACGGCCATCCTGCGCGAGTGGCTCATTAAAGTGCAGAGTCTGTATCACTATGTGGAGTGGAGACCACAGCAGGAGCCCAGcGGGTATGAAGATGAGGACAGCCCGAAGCACTGGTCCGACCTACGCTATGAGCATGTGATGAAGCTACGACAAGCAGCGCTGGACACTGCGAGGCAGATGTGGGCCGACTACTTTCTGTTGCTGGACTGTGATAATCTTCTCTTTAACCCTGATGTCCTGTGGAAGCtgatgaaggaaaataaaaccaTTGTGGCACCAATGATGGAGTCCAGAGCTGCGTACTCCAACTTCTGGTGCGGAATGACCTctcagGGCTACTACAGGCGCACACCGGACTACATGCGCATAAGGCGTCAGGAGAGGCGAGGCTGCTTCCCCGTCCCCATGGTTCACTCCACCTTCCTGCTGGATTTGAGGAAACAAGCTTCCAGCGAGCTGGCCTTCTACCCTCCACACCCCGACTACACCTGGGCCTTCGACGACGTCATCGTGTTCGCCTTCTCCGCCcgcatggcagatGTTCAAATGTACTTGTGTAATCGAGAGACTTACGGCCACTTCCCTGTCCCACTGCATACCCATAATTCCTTGCGAGATGAGGCTGACAACTTCCTGCACACTCTGCTCGAGGTCATGGTGCATGGTTCTCCGGTGGAACCCTCAgtccatctctctgtccctccTAAACGGCCTGATAAACTGGGCTTTGATGAGGTGTTCATGATTAACCTACTGAGGCGTCTGGATCGTAGAGAGCGAATGTTGAGGACTCTGTGGGAGCAGGAGATCACCTGCAAGATTGTAAACGCAGTGGATGGCAAggcgCTGAATGAGAGTCAGATCCGTGCGTTAGGGATCAGCATGTTGCCGGGTTACAGTGATCCATATCATGGCAGGCCGCTCACTAAAGGAGAACTTGGCTGCTTCCTGTCCCATTACAACATCTggactgagATCGTAGAGCGAGGACTGCAGAGGTCTCTGGTTATAGAAGACGATTTACGCTTTGAGCTCTTCTTTAAAAGGAGACTTCAGAAACTGATGCAGGAAGTGGAGGCAGAAGGACTCGACTGGGATTTAAtTTACATCGGGAGGAAGAGGATGCAAATGGACGATCCCGAGAAACCGGTTCCCAACATCCGCAACCTGGTCGAAGCTGACTATTCCTACTGGACACTGGGCTACATGATCTCATTACAAGGAGCCAATAAGCTGCTGAGGGCGGAGCCTCTGAGCAAAATGCTTCCTGTAGACGAGTTTCTGCCGGTCATGTACAACAAGCACCCAGTGGAGGAGTACATGTCCCACTATGAGGTGAGGGATCTACGGGCGTTCTCCGCCGAGCCGCTACTCATCTACCCCACGCACTACACGGGCGATCCGGGCTACATCAGCGACACCGAGACATCCACCGTGTGGAACAACGAGACCGTACGCACTGACTGGGACCGAGAGCGTTCGGAAAAGAACCGCGCCATGCACTCACACGCTACCTctcacctctgacctctcacGCAAAGGACAACTTTTTTCGCACCACTAGATGGTGCTAGTGAGCAAAACGCACAAGGAGAGGAGTGTGTAATGAGGAACGCACTCCACCTCAACAGCAAAATCAGTGTAGCACAAACAATGGAACTGAAGCGATTTTGCTCTGAACATCACATACTCTTTACTTCAAACGGAATCTCATCGGGTAGCTAGCTGGGTTGCTCACTAGCCATTTTATTAACAGTTCTGCTAAAGGTGAGGCGAGACAGTTTTAACATGTTGAGAtgtttgaattaaaatgaaaagtctCATTTCTGTGGTTTAGATGTGGTGATGTGGAGGATCCAAACTTTCAGGCCAAAACAGaagttgttgttgattatttcaaAGCAATagttgggcaaaaaaaaaaaaaaatctacacaatgTTTGATGTCTGaagttttcacattttcacctTCAAACGTAATGTTTGGCTCAAGTAAAGAAGCGAGCTTCAGACAGTAAACGTGTTCTGGCTGATCGACTGTGTTTGGGGCAGAGACACTGTGTACGTTTAAGGTGACTCAGTAATGTGGTAAATATGGAGACTATAAGTATTGAAATGGGCTGTTGGGACAGTTTTGCAGTGTGTAATGggataatttattttaaatatataaagatacAATATTATTTCTGTAGAAGAGATCAGTCAGAACTGAGAGTATGACAATTTCTGCGCTATGTATCATTACATAAGTAGTCATGAAATATGTTTTGAGATTTGATCCATAATGTATGAAGACTGTTTGCTTCTTTGGGTTCTGTTATTGTTCCAGTGTGCTGCTGGTCGAAAACCAAAGGTCTGCTGGTTTTCAGGactatattaatattcatgGTAACGTTAAAGGGGTAGTCAGGTGGATTGTGTTGAAATCTAACACTCCGGtttgtgcaaaaaaagaaaaaaaagctattatTACAAGTTATCAATCTTAACTTGTTTCTGATTGAGGACTGAACTGAAATACTTGACTTACAGCTTAGACGTGATTCACTCGTATACTGAAGCGCTTTTCAGAACCGTGACTGTTATTTGAGTTCTTCCTGAGAGAACTGATGTATTTTACTGGTAAGAATTTGGTCCTCTGTGTCTTCATATGCTaatgttgtttctttttcctttataaaactagacataaaaaaatgcagttatgAGAAGAGAGTAAGAATGATGggctataaacagattaaatctATCATTTGAGTCTCAAAAAAACCCAACTTTAAAAGCATTACTATTTTTTAGATGGTTTAGATTCATTGTGGGAGAGCTAGGCTTTTTTTTACTAACCAAAAGTCATCTACTGGTGAATTTGATATACaataatgtagttttttttgtttaatctcATAACAAATATATTGAGgcaacaaagtttttttttttttaacttctgcaTGACTGATGATTGTTAATGTAAGTAAAAGTAACTTTGTATTTatcttttttgctgttttttaaacCTATCGTTTAAAGTTTATTATCTAATTCCATATTTGTAGTTAATTATGTTTGAGACATCGTCATTTCAGAGAGGAAATGCCGTAATGTGGTTTTTATTTGCATAACCTGGAAGTGTcaaatttctttttctaaacTTAGCTGatgtatttgttattttttaacccATTATTGTTcagatttattgttttcatctgttactttcaggtttattttatcatcatttcAAAGAAGTGCCTTAAAACATGGATGTTTGCGAGTCGTATGAAACTGTCTGACTAACACTTTGTTACACGGTGACGATCTAAGAAACAATTGCGGCTGAAGGTGACGTTTTCAGCTGATCTGAAGTCAGTTTTATAGGTTTTTATGGTTAAATTAAACACGATGCAGGCTGCTTGTCATTTGTAACACATCATAATATAATCACTTACCTCTTCTCATGGTTTATTGTGATATAaaactgattatattatatttctcaGGACCAGGGTATATGAGGAGTAACTGATGATCAGTAAATGAAAGACAGATCAGTTGAGATCAGCagcttcagctgtgtgtgtatgtgtaaaattCTTTCTGCTTGCAGATTAACTTATTGCTCATTTCCACTAACGGTGTGATCACACAGagtgttacagtgtttaattacaGCCAAAAATGTGAAAGAACACAGAGgagaaacattttattctttctttctcaaccTCATGCTTTGATTGTATTGGAGAGCCGAGGAATTAATGGTGggaagctttatttaaaaaaaaaaaatgtaaaaagactCTGAGACTGAAAAAAGCTCGTTACAGATGTGTCTATAAAACACGTACTCTGTCCTTCACTTTATCGAGCCGTATTTATCATGGTGTGTCTTTTGATTGAGCAATACAGAGAAAAATTGTT

Function

GO:

id name namespace
GO:0009103 lipopolysaccharide biosynthetic process biological_process

KEGG:

id description
K11703 GLT25D; collagen beta-1,O-galactosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU447707 lncRNA downstream 27849 17241835 ~ 17253715 (-) True G377847
XR_004577336.1 lncRNA downstream 203403 17068536 ~ 17078161 (-) True LOC117596165
TU447211 lncRNA downstream 229299 17032903 ~ 17052265 (-) True G377474
TU447172 lncRNA downstream 285915 16995398 ~ 16995649 (-) True G377441
TU447151 lncRNA downstream 422855 16856779 ~ 16858709 (-) True G377422
TU447754 lncRNA upstream 18324 17316551 ~ 17316980 (-) True G377874
TU447757 lncRNA upstream 22424 17320651 ~ 17337648 (-) True G377877
TU447766 lncRNA upstream 40060 17338287 ~ 17338671 (-) False LOC113526761
TU447776 lncRNA upstream 82954 17381181 ~ 17381602 (-) True G377892
TU447801 lncRNA upstream 170728 17468955 ~ 17560120 (-) True G377916
XM_026914396.2 mRNA downstream 2471 17274442 ~ 17279093 (-) True nxnl1
XM_026914397.2 mRNA downstream 5807 17274442 ~ 17275757 (-) False nxnl1
XM_034300315.1 mRNA downstream 59000 17215246 ~ 17222564 (-) True LOC113525654
XM_034300313.1 mRNA downstream 67811 17206715 ~ 17213753 (-) False LOC113525651
XM_034300310.1 mRNA downstream 77992 17186588 ~ 17203572 (-) True LOC113525651
XM_034300125.1 mRNA upstream 19475 17317702 ~ 17322146 (-) True LOC117596143
XM_034300124.1 mRNA upstream 21995 17320222 ~ 17322146 (-) False LOC117596143
XM_026914087.2 mRNA upstream 35069 17333296 ~ 17338806 (-) False LOC113526761
XM_026914086.2 mRNA upstream 35069 17333296 ~ 17338806 (-) True LOC113526761
XM_026913552.2 mRNA upstream 42281 17340508 ~ 17345865 (-) True LOC113526483
TU447735 other downstream 13534 17266229 ~ 17268030 (-) True G377862
TU447682 other downstream 86572 17182732 ~ 17194992 (-) False LOC113525650
TU447143 other downstream 429901 16845012 ~ 16851663 (-) True G377416
TU447144 other downstream 435962 16845012 ~ 16845602 (-) False G377416
XR_004577334.1 other downstream 806133 16425454 ~ 16475431 (-) False LOC113537389
TU447860 other upstream 409773 17708000 ~ 17712592 (-) False ubl5
TU447895 other upstream 505033 17803260 ~ 17814445 (-) True G377994
XR_004577358.1 other upstream 865319 18163546 ~ 18166960 (-) False LOC113524896
TU448228 other upstream 1065216 18363443 ~ 18365921 (-) False gpank1
TU448229 other upstream 1065216 18363443 ~ 18365921 (-) False gpank1

Expression Profile