RNA id: TCONS_00008111



Basic Information


Item Value
RNA id TCONS_00008111
length 1452
RNA type mRNA
GC content 0.48
exon number 14
gene id XLOC_004249
representative True

Chromosome Information


Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 34550847 ~ 34577106 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


GGGCGTGTGTGCTCGTGTTTTCACATACTTCTCCTTTATACCTCAAGGCTCgagcatcaaaataaagcacTAACACACAAAACGCGGACAATGAGGGGTGCTAGCCGGTCCAAAATCACGCAGAATCTGGATAAGAGAGTATGCATGACAAACTGCCCTACGCTTATAGTAACCGTCGGTCTGCCCGCCAGAGGAAAGACCTACATCTCCAAAAAACTGACACGCTACCTCAACTGGATTGATGTTCCTACGAAAGAGTTTAACGTTGGCCAATACAGACGAGAATGTGTTAAGATCTACAAATCCTTTGAGTTTTTTCGACCAGACAATGAAGAGGGGCTCAAAATCAGGAAGCAGTGTGCACTGGCAGCTCTCAATGATGTCCGGCAGTTCCTCACAGATGAAGGTGGACAGGTGGCGGTTTTTGATGCCACAAACACGACAAGAGAAAGAAGAGACACAATCATCAGATTTGCAGAGCAGAACGGTTTCAAGGTGTTCTTTGTAGAGTCTGTGTGTGAAGACCCTGACGTTATCGCTGAAAACATTGTGCAAGTGAAGCTGGGCAGTCCAGACTACACACACTGTAACACAGAAGAGGCCGTCGCTGACTTTATGAAGAGGATAAAGTGTTATGAGAACTCCTACCAACCCCTGGATGAGGAACTGGACCGggaTCTTTCCTTCATAAAGATCATTGATGTGGGCCGAAGGTACCTAGTGAACCGGGTTCAGGACCACATACAGAGCAGAATAGTTTACTACCTCATGAATATCCACATCACGCCGCGGTCCATCTACTTGTGCCGGCATGGAGAGAGTGATCTGAACATTAAAGGCCGAATCGGAGGAGATTCAGGGCTTTCAGCAAGGGGAAAGAAGTATGCTGAGACTTTGGGTCAGTTTATCCAGTCGCAGAATATTCACGAATTGAAAGTGTGGACGAGTCAGATGAAGAGGACCATACAGACGGCAGAAGCTGTGGGCGTACCGTACGAACAGTGGAAAGCTCTCAATGAGATCGATGCCGGTGTCTGTGAGGAGCTCATGTATGAGGAGATCCAGCAGCGATATCCGCTTGAGTTTGCATTACGGGACCAGGATAAATATCGATACCGCTATCCCAAAGGAGAGTCCTATGAAGACTTGGTCCAGAGGCTGGAACCCGTGATCATGGAGTTAGAAAGGCAGGAAAACGTTCTGGTCATCTGTCATCAAGCCGTCATGAGATGCTTGCTGGCCTACTTTCTGGACAAAACAGCAGAGGAATTGCCTTATCTGAAATGCCCTCTACACACAGTATTGAAGTTAACACCAGTGGCCTATGGTTGCAAGGTGGAGTCGATTGATTTGAAAGTGGAAGCTgtgaacacacacagagacagaccgACGAACGTAGATGTGTCTCGGCTGGCGGAAGAGGCTTTGTTAACAGTACCAGATCATCACTGA

Function


GO:

id name namespace
GO:0045786 negative regulation of cell cycle biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-051120-51 Predicted to enable 6-phosphofructo-2-kinase activity and fructose-2,6-bisphosphate 2-phosphatase activity. Predicted to be involved in fructose 2,6-bisphosphate metabolic process. Predicted to act upstream of or within fructose metabolic process and phosphorylation. Predicted to be active in cytosol. Orthologous to human PFKFB4 (6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4).

Ensembl:

ensembl_id ENSDART00000133302

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00008833 lncRNA downstream 199098 34315525 ~ 34358689 (-) True XLOC_004244
TCONS_00008101 lncRNA downstream 302567 34249456 ~ 34255220 (-) True XLOC_004243
TCONS_00008100 lncRNA downstream 331989 34222893 ~ 34225798 (-) True XLOC_004242
TCONS_00008099 lncRNA downstream 332230 34220350 ~ 34225557 (-) False XLOC_004242
TCONS_00008482 lncRNA downstream 564640 33992033 ~ 33993147 (-) True XLOC_004235
TCONS_00008835 lncRNA upstream 860979 35438013 ~ 35441417 (-) True XLOC_004255
TCONS_00008836 lncRNA upstream 1001696 35578730 ~ 35741441 (-) False XLOC_004257
TCONS_00008483 lncRNA upstream 1002823 35579857 ~ 35585628 (-) False XLOC_004257
TCONS_00008484 lncRNA upstream 1087517 35664551 ~ 35741440 (-) False XLOC_004257
TCONS_00008837 lncRNA upstream 1087517 35664551 ~ 35741441 (-) False XLOC_004257
TCONS_00008106 mRNA downstream 35538 34488869 ~ 34522249 (-) False XLOC_004248
TCONS_00008108 mRNA downstream 36445 34489410 ~ 34521342 (-) True XLOC_004248
TCONS_00008107 mRNA downstream 39425 34489410 ~ 34518362 (-) False XLOC_004248
TCONS_00008103 mRNA downstream 76965 34401460 ~ 34480822 (-) False XLOC_004246
TCONS_00008104 mRNA downstream 79562 34402416 ~ 34478225 (-) True XLOC_004246
TCONS_00008112 mRNA upstream 3051 34580085 ~ 34628789 (-) True XLOC_004250
TCONS_00008113 mRNA upstream 56358 34633392 ~ 34720629 (-) False XLOC_004251
TCONS_00008114 mRNA upstream 73093 34650127 ~ 34720630 (-) True XLOC_004251
TCONS_00008116 mRNA upstream 202576 34779610 ~ 34783938 (-) False XLOC_004252
TCONS_00008115 mRNA upstream 202576 34779610 ~ 34783938 (-) True XLOC_004252
TCONS_00008105 other downstream 91274 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008102 other downstream 202125 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008088 other downstream 591515 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008078 other downstream 1186420 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008075 other downstream 1820194 32731165 ~ 32737593 (-) True XLOC_004221
TCONS_00008119 other upstream 647988 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008174 other upstream 2722337 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008194 other upstream 3598037 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008207 other upstream 4370953 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008210 other upstream 4512841 39089875 ~ 39089991 (-) True XLOC_004308

Expression Profile


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