RNA id: XM_026928684.2


Basic Information

Item Value
RNA id XM_026928684.2
length 1753
RNA type mRNA
GC content 0.37
exon number 6
gene id cnpy3
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 4511270 ~ 4517988 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTGATGTGTTGGACAGGACTACGGCGGAAGTGGATGCTGCAGAAGCAGGGAGTGCTTAGAAGCCGATGACAGCAGTCTTATTTATCTTGtttgtattataaataaatatattaccaCAGAAGACACAGTGTTTGAaatgaatgtgttcatttttatagCATTAGCTTTCATAAGTACACAAGCGGCTCGAAGAAGTGACGACGATGACTGGGTGCATTTACCGAATAAATGTGAAGTATGTAAGTTTTTGAGCATTGAGATGAAATCCGCCTTAGAAGAAACGGGGAAAACGAAAGAAGTGATAGAGACGAACTACCGTTTCTTGGACGATAAAGGAGCACCACCAATCAAATATGTAAAATCTGACATTCGGCTCATAGAGGTAATGGAAAATGTATGTACAAGGATCCTGCAGTATAATttacacaaagagagagatggcaGCAATCGCTTTGCAAAGGGTATGTCTGAGACATTTTCGACCTTGCATAACCTGGTCCATAAAGGAGTGAAGGTTGTCATGGACATTCCTTATGAGCTGTGGAATGAGACAAGTGCTGAAGTATCTGACCTCAAGAAACAGTGTGATGTGATGGTTGAGCAGTATGAAGAGGTCATTGAAGACTGGTATAAAGGCAGCCAGGAAGAAGACCTAATGACATACCTGTGTGAGAAACATGTTCTGAAAGGACAAGACTCATcATGTCTAAAAGAAATGTGGCATGAGAAGAAAGGAGATCCTGCAGCCATCGcacaagacaaaaagaaaaagaaaagcaaaaagaagGCCAAAGGTGGTGAGCATAACCAAAACAAAGAgaagaagggaaagaaaaagaaaagtaagcTTGAACACAGCGACAAGCAGAAAACTGAAGAGGAGGGACATACGTCAGATGAGGAGATACAAAGGAGTGCTCCTCTTCATCAGGAGAGAACTGAACTCTGACCTGTCTAACTTCATTCAGACCTTATTTTTGTCCTAGCGCTACACGTTTGGTGGACATGTGTGGTTTGGCATAAATTGTGTTAAAACTTCTGAAGTGTTGAAGTGTGGTAACACAGTAAAGAATAATATcaaactgcctttttttttttttttttttttgggaagagTGCATAATTTCCGCTGAGTTAAGGTAAGGTACAAGTTTTGGTTGGAGTggaattttttcccctcatttttttcccccaacaggATGCTGTGATGAGCATAAAGAGACTATTAACATGATGATTTGGCCTCCTTAATTACTGAAGTGTTAAATCATGTAAAACTTTGATTCAGTTAATATgactttataaattttattgttGCATAAGAGTCATAaaatgtgaattatttatttttttctttacagtttaCTGCAAACCTCCTttacatttgaaatgttttgtttagtaGAGATGCATAGTTTAGTCATAGTTTAACCCTTATTCTTGTGCTGTGGACTAAAAAGCTTTGAATAATGCAATCACAATTTCAGGTCAGTAATTTTTCTGtattagtgtgtcagtgttatTTTGGATGATTTctaagtacatttttaaagtccATGCTTTGGCTATGAAATGCTGCGACTCCTAAAGATCAGAAATGGTGTGTTGTATtttaggagggaaaaaaacagttacaaatattgcatttttgcaGGCTGTTATTTTACTATATCTTCTGTCTGTGAATAGTATCTTACTGCTAGAGACAGCTTGTGGTTTTGATATGTAATAAACATTGATAATTGGACAATA

Function

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0005783 endoplasmic reticulum cellular_component

KEGG:

id description
K22816 CNPY3_4; protein canopy 3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU438835 lncRNA downstream 64164 4446458 ~ 4447106 (-) True G370468
TU438789 lncRNA downstream 369142 4141922 ~ 4142128 (-) True G370425
TU438781 lncRNA downstream 524648 3986205 ~ 3986622 (-) True G370418
TU438779 lncRNA downstream 527691 3983111 ~ 3983579 (-) True G370416
TU438778 lncRNA downstream 528330 3981710 ~ 3982940 (-) True G370415
TU439062 lncRNA upstream 286892 4804880 ~ 4811748 (-) True G370665
TU439059 lncRNA upstream 378239 4896227 ~ 4914035 (-) True G370663
TU439109 lncRNA upstream 528052 5046040 ~ 5046246 (-) True G370699
TU439112 lncRNA upstream 540865 5058853 ~ 5059054 (-) True G370702
TU439117 lncRNA upstream 544156 5062144 ~ 5062436 (-) True G370705
XM_034300309.1 mRNA downstream 6531 4488149 ~ 4504739 (-) True LOC113535753
XM_034299954.1 mRNA downstream 893150 3611719 ~ 3618120 (-) True LOC113535432
XM_026928713.2 mRNA downstream 894378 3611719 ~ 3616892 (-) False LOC113535432
XM_026928711.2 mRNA downstream 1340785 3083070 ~ 3170485 (-) True gpc5a
XM_034300420.1 mRNA downstream 1619185 2874908 ~ 2892085 (-) True LOC117596192
XM_026929209.2 mRNA upstream 78442 4596430 ~ 4618808 (-) False cfap221
XM_026929207.2 mRNA upstream 78442 4596430 ~ 4618808 (-) False cfap221
XM_026929211.2 mRNA upstream 78442 4596430 ~ 4618297 (-) False cfap221
XM_026929208.2 mRNA upstream 78442 4596430 ~ 4618296 (-) True cfap221
XM_026929210.2 mRNA upstream 78442 4596430 ~ 4618295 (-) False cfap221
XR_004577367.1 other downstream 48056 4463108 ~ 4463214 (-) True LOC117596198
XR_004577366.1 other downstream 49955 4461209 ~ 4461315 (-) True LOC117596197
XR_004577365.1 other downstream 51847 4459317 ~ 4459423 (-) True LOC117596196
XR_003403643.2 other downstream 53729 4457435 ~ 4457541 (-) True LOC113535829
TU438365 other downstream 1658059 2843212 ~ 2853211 (-) True LOC117596167
XR_004577360.1 other upstream 6514 4524502 ~ 4524784 (-) True LOC117596183
TU439054 other upstream 325341 4843329 ~ 4889381 (-) True G370658
XR_004577341.1 other upstream 1016427 5534415 ~ 5547032 (-) False LOC113537235
XR_003403738.2 other upstream 1016427 5534415 ~ 5547032 (-) False LOC113537235
XR_003403737.2 other upstream 1016427 5534415 ~ 5547032 (-) False LOC113537235

Expression Profile