RNA id: XM_026928711.2


Basic Information

Item Value
RNA id XM_026928711.2
length 3204
RNA type mRNA
GC content 0.49
exon number 10
gene id gpc5a
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 3083070 ~ 3170485 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcctttcttccacCTTTCTCTTCCTGgccttttcttcctctcccGGGTTCGCTTGCGTTTCTGTTTTCTGTCCACTAGGTGCCGCTGTGGCCTTCAGGAAGTTAAACATTGGGAAGGAAGGATTTGACATTTTGCTTGAATTACTCTTGATTTAAGAAGCAGCTGATTAAAGCTCATTACAGCACTGCAGATTATAGAGTGCAGCTCTGAGGGAACTTTCCAGGATCAGTGACGGATGAAAATGTAGCTTCAGGAAAGAGCAGTGTGTTcagaaaagctctggagtgtgtgtgctggagtgttCAGATGGCCCTGAGCTATACTGTCTTGTGTTTGTTTAGATTTCACTGtggactagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtatatgagtgtgtgaaatgatGTCAGTGTGAgaaggaggagctggaggaggcgGAGACAATTCCAGGACACCGCCCATGTTGCTTTGACAGCTCcagtaaagctgtgtgtttgtgtgtgtgtgtgtgtgtacgcgtgtGTGTACTGGTTGTTACTGCGCCGTGTGAGACTTAATGCATATCATCTGAGTATTTGCAGCATCACCTGTGAGTGGATCAAGGTTCCCTCCACACCTGGAGTTTCTCTGAACAGAGTCATTACTGCAGCTAGATTGTTGTAGTTAAAATGGACAGCTGGTGGTGgttggtgtgtttgtgctttgcTGCTCTCACTGACAGAACGCAACAAAACACGATGAGCTGCGATAGCGTGCACAATCTTCTGCAGCTGCAGCAGATCGACACAACAACTGGTGTACTGGACACACCTGAGAAAGAATCGGATCTTCAAGTGTGTCTTAGCCGCAGTGTGACCTGCTGCACGAGGAAGGTGGAGGAGCAGTACCAAACAGCAGTGCATCAGGACATCCAGAACCTTTTGCAGACCTTCAGCTACAACCTGAAGCTCCTCATCACACAAAATATTGCTGCCTTACAAGACATGGTGGACTTGGTGGTGCGTGAAGTGCAGAACAACACCTTTTCCCTCTTGAAAGTTTTGTACGGTGACCTCGCCTCACGTGCTTCCTCTCCGCTGGCTGAACTCTTTACTGATGTTGGTCTCTTTGtgctgggggcggagcttaaccTGGAAGAAGCAGCACAACGTTTTTTCCAAGCACTTTTCCCATTGGTGTATGACCAACTTGAGAAGCCAGGCATGGCACGTTTAGATCCCGTCTACCAAGAGTGTTTGCGGTCAGTCGGGCGCCGCACAGCAGCGTATGGTAATGCCCCAAAACGCCTCGCGTTGCTGGTGGCACGTGGCTCGCGGGAAGAACGCATTTTTCTGCAGTCGATGCACCTTGCCGTTGAGGTCATCAACACCACAGACCACGCTCAGCCAAGCCGTGAGTGCCGTCGTGCGTTAATGCGAATGCGCTACTGCCCACTGTGCCAAGCCCTGACAGACAGCAAGCCATGCATGGGCTACTGCCTGAACGTGCTGCGTGGCTGCCTGGCCAGTCTCGCCGAGGTCGACACCCACTGGCAGGAATTTGTACGCTCGCTGGAAGCGCTCGCGGCACGCATGCATGATGGGAACGAGCTCGAGCATGTACTCGCCTCAGTTCCCCCTCTCATCATCGAGGCTGTGGCTTACACAAGCAGGAATGCTGCCCAACTCACCTCACAGGTTCGAGGTGTGTGTGGAGAACCTGTACGCTCTGGTCCTGTCCAGCAGGGAGGTGCTAGTGACGCACTATACCTCCAAACCCCTGAAAGAAGCACAGAGGACACACTGAGTCACAGGAGACGggAATTCCTCAGTTCTTTGCGGCACTATCGGGCATTTTACGGAGGTTTGGCTGATCAGATGTGTGTTCGAGAGCTAGCGTCAACTGACGGCCCCACCTGCTGGAACGGAAATGACGTGGTCAAGAGTTACACAAAGCGAGTGGTGGGCAGTGGGATACGAGCCCAGGGACAAAACCCAGAAGTACGGGTGAAGGACGCTGATCCGGGCATCAACCAGGTGATCGACAAGCTGAAGTATATCAACCAGCTCCTGCAGGGACGTTTTATCCCTAAATTGGGCACTCTGGACCAGATCGAGATGGGCAGCGGCGAGATGGGCATTTCGTTTAGTGGACAATGTGATGATGAGGATGGCTGCTGGGGGTCTGGAGACGGAGCTGGAGAAACTCGGATCATTAAACCAACTGAATTGACTGAAGAGAAGCCTGGTGAAAACCTACACCCtggcccacacacacaggatgctGGATGCACACTTGAGGTTTCCGGCtgcaagaacacacacagtgccttgTGGGTTCTGAGTGCAGTATACACACTGCTAACGTTATGGAGGTAACACCAGAACACACTCCGGCACACTCCTGAACCTGGACGCAGTAAAGACTCTGTACCAAGACACCTTTTCTTCTCtcgcctgttttttttttcttttttcttttctgatgtGGCACATTTTCACTGCCGACTCTGACACTTGCTCCATAACACTACTCCTTTGTGTTAGGGGCCCTCTGGAGTCAACGAGGGTGAAAAAAAGAACCCTGAGATGTTCCTGACATTCCCTTACAGACGGGGGCAGATTTAAACTGTGTAGGTGATGATTAAGGGGGCGGGGCTATGCTCCTGAGGGAGGATGATTGACAGCTGGAGGGCGCATGACTGACCTGCAGCTTCTGACAGAGGTTTAacggagagggaaaaaaaaaaggaaaacggAGGAGGAAATAGAGGGAGAAACATAGAAAGAGAGAATTCTGGAACACAGAGTTAACCTGGTGTAATCTGATTACTGATGACTTTTAATATCTGAATAttcattacttttaaaattaatattcgTAAGAAACTGTCAGCCTAGTCAGCGTGGAggatttaaatttagatttaaatttatgCACACACTTTAGTCTTCACAGACGGACAGTgagacggacagacagatgaataCAGGATGTATTGTactagatagacagatagacagagacagatagacagagacagatagacagagacagatagatagatagacatatgGCCTAACAAACATACAGACAAAATACAGTGTACataagtctacacacccctgttgaaattgcaggtttttgtgaaataaacaaataatgcCAAAATAaatccacctttaatgtgaaaaacaaacagaaatattttataaggga

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K08111 GPC5; glypican 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU438554 lncRNA downstream 10469 3069998 ~ 3072601 (-) True G370207
XR_004577320.1 lncRNA downstream 30868 3039174 ~ 3052202 (-) True LOC117596157
TU438470 lncRNA downstream 98140 2949421 ~ 2984930 (-) False G370127
TU438468 lncRNA downstream 98140 2964268 ~ 2984930 (-) True G370127
XR_004577338.1 lncRNA downstream 229859 2846380 ~ 2853211 (-) False LOC117596167
TU438584 lncRNA upstream 4659 3175144 ~ 3176945 (-) True G370237
TU438619 lncRNA upstream 54535 3225020 ~ 3225235 (-) True G370272
TU438629 lncRNA upstream 59464 3229949 ~ 3230185 (-) True G370282
TU438655 lncRNA upstream 295162 3465647 ~ 3465861 (-) True G370308
TU438674 lncRNA upstream 433869 3604354 ~ 3604585 (-) True G370327
XM_034300420.1 mRNA downstream 190985 2874908 ~ 2892085 (-) True LOC117596192
XM_026928791.2 mRNA downstream 244281 2833613 ~ 2838789 (-) True LOC113535482
XM_026928792.2 mRNA downstream 255470 2823993 ~ 2827600 (-) True LOC113535483
XM_034300419.1 mRNA downstream 271461 2808317 ~ 2811609 (-) True LOC113535756
XM_026928790.2 mRNA downstream 278941 2797268 ~ 2804129 (-) False LOC113535480
XM_034299954.1 mRNA upstream 441234 3611719 ~ 3618120 (-) True LOC113535432
XM_026928713.2 mRNA upstream 441234 3611719 ~ 3616892 (-) False LOC113535432
XM_034300309.1 mRNA upstream 1317664 4488149 ~ 4504739 (-) True LOC113535753
XM_026928684.2 mRNA upstream 1340785 4511270 ~ 4517988 (-) True cnpy3
XM_026929209.2 mRNA upstream 1425945 4596430 ~ 4618808 (-) False cfap221
TU438365 other downstream 229859 2843212 ~ 2853211 (-) True LOC117596167
XR_003403632.2 other downstream 508599 2566757 ~ 2574471 (-) False LOC113535702
TU437816 other downstream 1287846 1792187 ~ 1795224 (-) True G369586
XR_004577318.1 other downstream 1483326 1541362 ~ 1599744 (-) False nrp2a
TU437448 other downstream 1806257 1276021 ~ 1276813 (-) True G369242
XR_003403643.2 other upstream 1286950 4457435 ~ 4457541 (-) True LOC113535829
XR_004577365.1 other upstream 1288832 4459317 ~ 4459423 (-) True LOC117596196
XR_004577366.1 other upstream 1290724 4461209 ~ 4461315 (-) True LOC117596197
XR_004577367.1 other upstream 1292623 4463108 ~ 4463214 (-) True LOC117596198
XR_004577360.1 other upstream 1354017 4524502 ~ 4524784 (-) True LOC117596183

Expression Profile