RNA id: XM_034299954.1


Basic Information

Item Value
RNA id XM_034299954.1
length 4945
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC113535432
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 3611719 ~ 3618120 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tatAAGATCTGATGGTCGGTGTTGAGTGTGCGGACGGATGGAGCATCATCAGCATCAGGATCCCTGCACGCGCGCACCGCCACCGTACTCCCTATACACGCGCGCGCGGCAGTGTTTAATCGTCTGCTAGTCTGAGAGAAGTGAGAGCGCGAgcgagcagagagagagagagagagagagagagcgacgatgcacgcgcgcgcgcatcgtcaccaccaccatcatcattatccGTAGAAAATTCGGTGTTAAAACGAATcggattttcttttaataaaaagaaagagagagatagagatagatagatagatagacagagagagagagtaagagagtgtgtgtgtgagagagagagagagagagagagagagagatactggaATAATCGGCACGGATTTTGCAGCCTGGCGCGCGCTACGTTCCGGTTAACGGATGTCGTGATGCAGCTGCCGCTTCGGAGACGATCAGCCCGATGACACCACAGTCTGCAGCGGCACTACAGTGAACGGCGCCATTCAATTCGATGAAAATGCGTGTCTGGATACTGACACTAATCTTGCTGCTTGCCGCTTCTCTGAGCCTGGTTGAGATGTATGAAAATTATGGGGAGATCTGTAGGAATTTGTGCACTTGTGAAGAAAAAGAGGGCATTCTGACGGTCAGCTGCGAGAACCGGGGCATTGTAAGACTGTCAGAAATCAGCCCGGTTCATTTCCCCACGTATCACCTTCTACTGACGGGGAACCTGCTGAAAAAATTGTCCGTCAATGACTTTATCAACTATACTGGAGTCACCATTTTGCATTTAGGCAACAACGACATATCCGAAGTGGAAACTGGGGCTTTTAATGGACTCCAGGGATTAAGGAGGTTGCacctaaacaacaacaaaatagaTGTTCTTAGGGATGATACGTTCACTGGATTAGAAAACCTGGAATACCTTCAGattgattacaattttattagtattattgaACCCAATGCTCTCAGCAGGCTCCACCGTCTGACTGTGCTAATTTTGAATGACAACCTCTTGTCATCGCTGCCTACCAACATTTTCCGAAATGTGCCCTTGACCCACTTGGATCTCAGGGGCAACCGCTTGAAAATGTTCCCTTACATTGGCCTTTTGGAGCACATGGATAAAGTGGTGGAATTACAGCTAGAGGAGAATCCGTGGAATTGTTCTTGCGAACTTATCGCACTAAAAGCTTGGCTAGAAAGCATTGCCTACACGGCACTAGTTGGCGAGGTGGTCTGTGAGACTCCATTCCGGCTCCACGGCCGCGATCTCGATGAGGTCTCCAAGCAGGAGCTGTGCCCTCGGAGGGCCATTTCGGAATATGAGATGCGCCCACCGCCACCTCTCAGCACGAACGGATATTTCCAGACGACGCCGGCGGCAGTGACTTCCTCAGCCACATCCTCAGCAGTGCTGAGGTCCTCATCCCGGCCTACCAAGGGCACTCGGCAGTCCAACAAGACCAGGTCCAAGCCCACGTCTCGCATCCCAGGCAATCCCTACAACTATGGGCCAATCATAGCTTTTCAGACCAAATCTCCTGTGCCTTTGGATTGCCCCACGGCATGCACGTGCAACCTTCAGATCTCTGATCTTGGGCTCAATGTCAACTGCCAGGAACGGAAAATTGAGAGTATATCAGATCTAAAGCCCAAGCCGTATAATCCCAAAAAAATGTACCTTACTGGGAATTACATCCCTGTTGTGCGCCGATCGGATTTCGTTGAGGCAGAGGGATTGGATTTGTTGCACTTGGGAAACAATCGGATAGCACTCATACATGACAGGGCATTTGGGGATTTAATTAATCTGCGCAGGTTGTACTTGAATGGCAATTTGATAGACAGGCTCACTGCAGACATGTTCTTTGGGCTCCAGAACCTGCAGTACTTGTATTTAGAGTACAACAAGATCAAGGAGGTTGTTGCCGGTACCTTCCGCTTCGTGCCAAACCTTCAGCTGCTTTTCCTAAACAACAATCTTCTAAAAACCTTGCCGGGAGGCATCTTTTCTAGTATGTCACTGTCAAGGCTCAATCTACGCAACAACCACTTTCAAAACTTGCCTGTGAGTGGAGTTCTAGATCAGCTCAAGGCTTTGGTGCAAGTGGATCTCTTTGAAAACCCTTGGGATTGCACGTGTGATGTGGTAGGCATGAAAATATGGCTGGAGCAGCTCAACTCTGGCACTGTGGTTAATGATGTCATATGTGCAACTCCAAAGAGACTTGCAGGGCAAGACATGCGCAGCGTCCTTTCTGAACAGTTATGTCCTGATTACTCGGATATTGTTGTATCTACGGTAGCTCTGTCGGAAGCGACCTTGGAAGGGAAGGTAATCACCACAGAGACCCCCTTGAGGTTCAACACTCCTTCAAGCACTGTCCCATTGTCAGTCCTCATCCTTAGCCTCCTCCTGGTCTTCATAATGTCTGTTTTTGTGGCTGCTGGGCTGTTTGTGGTGGTCATGAAACGGCgaaaaaagtcacaaagtgaCCGCACCAGCACCAACAACTCAGACGTAAGTTCCTTTAACCTTCAGTACAGTCTTTATAGCAATCGTTCTGTACCCAAAGTCAAAACCCCAGCAGGTCATGTCTACGAGTACATCCCCCATCCTCTTGGGCACATGTGCAAAAACCCCATTTATAGATCCAGAGAAGGTACCGCTGTGGAGGATTATCCTGATCTGCATGAGCTCAAGGTTAGCTACCGAAACACCAATGAAGAAGAGCGGGATCCAACGTCGAGGAGCCCTACGTACACCGTTAGCACCATTGAACCTAGGGAGGAACCTTCGACTGCTCAGGATGCCGAGCATTTCTTCCGAGGGATCTTAGAACCAGATAAAACTCCGAATAGTGCCGGAAATAGGTATGAGTACAAGTACCCCAGTCCTGGATCTTACACGTACAACCCAAATTTCGACGTACGTCGGCAATTCTTGCATCCCGAGGGAATTAGAGAAACTATGCTCTATAGCTCAGCTCCAAGTACTGTCTACGTGGAGCCGAACAGGAATGAGTATTTGGAACTAAAGGCAAAACTCCAAATGGAGCCAGATTACCTCGAAGTTCTTGAGAAACAGACAACGTTTAGCCAGTTTTAAACCTTGTCTATGAACATGCATACTGATAGAGATAGAGATTTTCACCCCGTTTCCATGCGAAGGGTGCACTGGGGTGTACGGTGTACACCATCTTTAAAGAAACAACAGAACAAAGGCAACAAACAAAAATCCTACAATGGGGTGTGCCAAACTGTCTTACCTTAATTTTTAAAGATACATGacattaaaggaaataaaaaaggaaaaaagctcTCGGGATGAAAGCACGAGTTGTGATACAAAACTGGTGATGCAAAAATCgcaaaatctatttttttaagttgacGATTGAATTGAATACACGTAAATAAACAAACGTAGCTGTACAGATTAATCCAAGTACGTTTTTTTCAGGAGTATAATCACGCAGATACTGCGAACTTTAACAAtacaaaattgaaaaagaacACTGTATTACAGTGCATCTAACTGTGCAGGACAATTCCTCTGCTCTAGtctgtaagtaagtaagtatttATTGGTATAATCTCCatgtatttttaacattatttgatTATTCATCATTATCACCTGTACCATTATCCCTCTGTACAAGCTTTTCGTTTGTAattttttgatcatttattgTAGCTTGCATTGTACAAGTGGCTTTCTTTCAGCGGTGGCACACCCCCCCCCTTCCCTGTCCCCATCTTCCTAAACCTCCGAGTCCTCCACCTTCATCTCCAGTGTCAAAGAGAGACTTTTGCttcatttaaagatttaaaaaagaagtgtCTTTGTATGCCGTCTgcactttttggaaaaaaaaaaaaagaaagaaagaaaaatggagggCCAATGTTGGTCTTCCCAGCTACCATTAGAggaattattatatattaaaatgattcattcattcttaatatgtattttaatatgttatcaaaaacaaattcataaatGATAATTGAAGTAATAATTATGTTGTGTAATactattttaatgtaacaccTATTTTTATACAAGCATTCgcaattctttcttttttcccccttattgttttttttttttttgattgcttTCCACTTATTATTGCACTATATTGACCAAAATATGTTTATGTCATCAATAAATATGATGTCAGGttcttatatacatacatatatatacatcattGTTGGCAACACATTTCCGGTACGACAGTCCTCTGGCACGAGGAGTCAAGTGATTTTAGGAGTTACATTAGCAATGCTAATCAATACAGAGTTGTAACCAGTGTTCAGAGGCGTTCCTAAAACAATCAATGCTtctcaaataaacattttttttttctgtgcaaaaaaGGGAAGAGAAGATGTGCTATAGTAGAAGGTTATTAGCACTGAAAATTGAAAATGGCAGGGTTAATATCGCAGTAGCTCTAGGCCATGTCATCAACTCGTTGCTCGTCTGCTGCATTTTAATAAGACGTTCTGAAATCTCTTGATTGCATGAGGCTGCATTTTGACTTCTGACTATAATGTGAGTTTTTACCTTGTAATTATTGGTATTCAATTTATTTCTGGTTAAACGAATAAGGTTAATTGATCTGAATTTACGTCGCAGAAAGTACTCTCAAAAAAATAGTTCATTCCTGGTATTGGTGTGTTTTGGACCACCAAATGTTCTGACATGATAAGCTTTCGAAAATGATTAGTAGATCAAATTCAAGTCTTTATGAAAAGATTTGAATCGCCCAAATTATTGCTATTTGGTCCATGTACATTATGTTTATTagttttgcatttcatttcacagtgaaaatggaaaaacaaggaaacagctttttactttgtttttgtttttttcttggcaTGCACTAAAATAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU438674 lncRNA downstream 7134 3604354 ~ 3604585 (-) True G370327
TU438655 lncRNA downstream 145858 3465647 ~ 3465861 (-) True G370308
TU438629 lncRNA downstream 381534 3229949 ~ 3230185 (-) True G370282
TU438619 lncRNA downstream 386484 3225020 ~ 3225235 (-) True G370272
TU438584 lncRNA downstream 434774 3175144 ~ 3176945 (-) True G370237
TU438732 lncRNA upstream 159009 3777129 ~ 3777343 (-) True G370372
TU438778 lncRNA upstream 363590 3981710 ~ 3982940 (-) True G370415
TU438779 lncRNA upstream 364991 3983111 ~ 3983579 (-) True G370416
TU438781 lncRNA upstream 368085 3986205 ~ 3986622 (-) True G370418
TU438789 lncRNA upstream 523802 4141922 ~ 4142128 (-) True G370425
XM_026928711.2 mRNA downstream 441234 3083070 ~ 3170485 (-) True gpc5a
XM_034300420.1 mRNA downstream 719634 2874908 ~ 2892085 (-) True LOC117596192
XM_026928791.2 mRNA downstream 772930 2833613 ~ 2838789 (-) True LOC113535482
XM_026928792.2 mRNA downstream 784119 2823993 ~ 2827600 (-) True LOC113535483
XM_034300419.1 mRNA downstream 800110 2808317 ~ 2811609 (-) True LOC113535756
XM_034300309.1 mRNA upstream 870029 4488149 ~ 4504739 (-) True LOC113535753
XM_026928684.2 mRNA upstream 893150 4511270 ~ 4517988 (-) True cnpy3
XM_026929209.2 mRNA upstream 978310 4596430 ~ 4618808 (-) False cfap221
XM_026929207.2 mRNA upstream 978310 4596430 ~ 4618808 (-) False cfap221
XM_026929211.2 mRNA upstream 978310 4596430 ~ 4618297 (-) False cfap221
TU438365 other downstream 758508 2843212 ~ 2853211 (-) True LOC117596167
XR_003403632.2 other downstream 1037248 2566757 ~ 2574471 (-) False LOC113535702
TU437816 other downstream 1816495 1792187 ~ 1795224 (-) True G369586
XR_004577318.1 other downstream 2011975 1541362 ~ 1599744 (-) False nrp2a
TU437448 other downstream 2334906 1276021 ~ 1276813 (-) True G369242
XR_003403643.2 other upstream 839315 4457435 ~ 4457541 (-) True LOC113535829
XR_004577365.1 other upstream 841197 4459317 ~ 4459423 (-) True LOC117596196
XR_004577366.1 other upstream 843089 4461209 ~ 4461315 (-) True LOC117596197
XR_004577367.1 other upstream 844988 4463108 ~ 4463214 (-) True LOC117596198
XR_004577360.1 other upstream 906382 4524502 ~ 4524784 (-) True LOC117596183

Expression Profile