RNA id: XM_026928728.2


Basic Information

Item Value
RNA id XM_026928728.2
length 3096
RNA type mRNA
GC content 0.40
exon number 7
gene id LOC113535442
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2501030 ~ 2515018 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCTCGTTCATAATTTTCATCCTGAAAATGACGTCACTCTCTAGGTTTGCATATGACAGAGACAGGAGGGGTGAAGAGGACAGACTAGTGAGAGGACAGACAAGTGAGAGGACACTGAGGTACAACAACATACAGGGAAGagaaatacatacaaaaaactGTGAGCATCCAGaaatggGTCATAACTGGGTTTCTGTCATCATCGTTTtctcagTTGTTTATAGTGCAGAGGCATTAATTCCTCATCGCTATCACTTTGTGAATGAGAGTAAAAACTGGAGTGAAGCTCAGATTTACTGCAGAGAGAAATACACTGATCTCGCCACCATCAACAACATGGAAGAGATGAAGAAGCTGAATCACACACTGAAGACGGAAACTGCAGAGCGAGCTTGGATCGGTCTACAGAGAGAGGGCACTGGGGAATGGCAGTGGTCTCTGGCAGACCAAACTTTCTACAGAGACGGAGACACTTACAGAAACTGGAGGAGTACAGAACCAAACAATTGCAAGAAAAATGAGTTCTGTGTTCAACTCATTATGAACTATGGCTCGTGGAATGATGAGCAGTGCAATGAGAAAAGACCTTTTGTGTGTTATGAAGaaaatgacacaaacactaacagATACAAATTGATTAATGAGACAAAGACCTGGTATGATGCTCAGACCTACTGCAGAGAGAAATACATTGATCTGGTCAGTGTGAGGAACCAAACTGAGAATGAGGAGATCTGGAGAGTGAGTCAAAATTCAACTAATGAAGATGTTTGGATTGGTCTGTTTAATAACTCCTGGAAGTGGTCAGATCAGAGTAATTCCTCATTCAGATACTGGAGCTCTAACAAACCCAGTGGACATTTGAACTGTActgcagtgtctgtgtctgaGCAACACTACTGGAGTAATGTGAACTGCAAGGAAAAGCTCCCATTCATCTGCCATGAGAATAAGCTGATCCTGATTAAGGAGAATCTGACCTGGAAAGAAGCTCTGAGATACTGCAGGAACCATCATTATGACCTGGTCTCAGTGCGCACTGAGGAGATGCAGCTCTGGGTGAAGGAAGTGGCTCGAAATGCCTCCACTGAACACGTGTGGCTCGGCCTGCGTCACACCTGCGCTCTGGGCTTCTGGTACTGGGTGACTGGAGAGATGATCTGCTACCAGGACTGGGCTCCGGGGAATGGGACAGGGTTCGAAGACTGCAGCAATGAGGAGAGAACCGGAGCAGTGCAGTCTGGAGGAGAGCAGCAGTGGATCAGCCTGCCTCAGAGCTACACACTCAACTTCATCTGCTCTACCTATGAAgGCTGAAGACAAGCTGTGGTTCATCTTCTGTATCCAACAttcacattactcacattattCACAATTAACATTAGTATCCCATTTATATATTTTcgacatactgtacattttaaatttgtaaatttaaatataaatttaaaatgtcttgTTCATCCTGATTATTTATCTTactattcaaattaaattatttggatgtcctcagaattatttaCCCCCCCTCCCCCCGTTCCTCAACACAAATTTTCTCTGCCAAATTAGATGGAGAATGCTGGTAGGCGGCAATTTTCATGCCATGCCACAGATTTTCACAGGGGTTTGACTCAGGGCCATTTCAGAACACAaaccttctttttttcaaaCCATTGCTTTGTAGTTTTTGGACCATCGTTCTCTTGGGACATAAATTTTTGCACTAGACACAGATTTATGGTTGACTGGAACAGATTTCACTCAGGAATTTGCTTGCATTTGGCTTCATCCACGTTGCCCTTGATGGCAACAAGATTTCCAGGTTCCTCTTGCTGAAAAGCAACTCCAGAGCaggatgctaccaccaccaccactaccaccactcTTGATGGTGTTACCTGTACCGGTGTTGGACTGTATTTGGTCTGCGCCAAACATAACACTTTGGTTTTTAGACCAAATGGCTCAAAACCTTTTTCCAAAAGTGTACTTTTATGTGATGTTAGCCTTTCTCAGAAGTGGCTTCCTTCTGGCCTCTCTCCCATAGAGGCCAGGCCTCTGAAGAGCTGGTGATCTTGTTGATGTCTGTGCAGGTTCTCATATTTCAGCCAGTGAGCTCTATAACTCCTCCAGTGTCATAGCTGGACTCTTGGACACTTCTCTTGCAGTTGCCTTTGAGCTTGGTAGTGTCtgggttgtgccatattttttttccccactttgttataatggatttcacagtgCTCCTTGTATGGTTCAAAGCTTTGTTGATCTTTTTATAACCTTCTCCAgcgttttttttctcctgtttgcCATTTCAGCCATGAGACCACCCAAATTCAGTGATATTTTTCATGCCAGCATACAATTGGACACaggtggatttgaaatgaacacaGGTGCAcgttgtttaacatatttagtaTGAGTGCTCAAGTAAATTAATTACCTCTCTTAATTTAGACTGTTAAAAAATACTTatcaatttttatatattttctatatactgtatttgattttaaatagttaaattattttaaaatcattttataataattttgagGACATCTGAATAATATTCTTAACTTTATTTCTTTAGATAgtcactcagaaaaaaaaattggctttATAATATACTTAAATTTTATGTTACAGTACATCAAAAAGAGAAATGGGTGAATACATGTGACACTTATGGTACAtgtaggtctgtgtgtgtgtgtgtgtaggtaaagAGTTAATGTAGATTGCATTTGccgtgtttatatttttataaatagatGGGTCTATTGGgtaatcaaattaaatgtaattgtttttcATATGCCTTCTTAAAAGGTAATTTAGTATTGTACATAAGACAGATCATGCCGTAAAATCATACATGTAGCAGCATACATGTTtcatatacaccgatcagccataacattaaaaccactgacaggtgaagtgaataacattgattatctcaatCATATCATCAAACATGTcagggggtgggatatattaggcagcatgtgaacagtcagttctcgaagatgatgtgtttgaagcaggataaatgggcaagcgtaaaggatctgagcgactttgaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577279.1 lncRNA downstream 155497 2343113 ~ 2345533 (-) False LOC113535806
XR_003403637.2 lncRNA downstream 155497 2343113 ~ 2345533 (-) True LOC113535806
XR_004577295.1 lncRNA downstream 255872 2199025 ~ 2245158 (-) True LOC117596129
XR_004577296.1 lncRNA downstream 255872 2244126 ~ 2245158 (-) False LOC117596129
XR_004577297.1 lncRNA downstream 313088 2186646 ~ 2187942 (-) True LOC117596130
TU438184 lncRNA upstream 5480 2520498 ~ 2522127 (-) True G369907
TU438207 lncRNA upstream 40961 2555979 ~ 2558765 (-) True G369924
TU438209 lncRNA upstream 40961 2555979 ~ 2558765 (-) False G369924
TU438210 lncRNA upstream 40961 2555979 ~ 2558765 (-) False G369924
TU438211 lncRNA upstream 40961 2555979 ~ 2558809 (-) False G369924
XM_026929274.2 mRNA downstream 150041 2347228 ~ 2350989 (-) True LOC113535761
XM_026929032.2 mRNA downstream 169360 2282791 ~ 2331670 (-) True LOC113535598
XM_034300269.1 mRNA downstream 229377 2261289 ~ 2271653 (-) False LOC113535651
XM_034300270.1 mRNA downstream 229387 2261289 ~ 2271643 (-) False LOC113535651
XM_034300271.1 mRNA downstream 234877 2261289 ~ 2266153 (-) True LOC113535651
XM_026928963.2 mRNA upstream 8097 2523115 ~ 2542866 (-) True LOC113535562
XM_026928960.2 mRNA upstream 8097 2523115 ~ 2542864 (-) False LOC113535562
XM_026928961.2 mRNA upstream 8097 2523115 ~ 2542602 (-) False LOC113535562
XM_026929206.2 mRNA upstream 51739 2566757 ~ 2574471 (-) True LOC113535702
XM_026929338.2 mRNA upstream 60432 2575450 ~ 2583050 (-) True LOC113535812
TU437816 other downstream 705806 1792187 ~ 1795224 (-) True G369586
XR_004577318.1 other downstream 901286 1541362 ~ 1599744 (-) False nrp2a
TU437448 other downstream 1224217 1276021 ~ 1276813 (-) True G369242
TU437316 other downstream 1585347 911553 ~ 915683 (-) True G369125
XR_004577324.1 other downstream 2273928 202654 ~ 227102 (-) True si:dkeyp-75b4.8
XR_003403632.2 other upstream 51739 2566757 ~ 2574471 (-) False LOC113535702
TU438365 other upstream 328194 2843212 ~ 2853211 (-) True LOC117596167
XR_003403643.2 other upstream 1942417 4457435 ~ 4457541 (-) True LOC113535829
XR_004577365.1 other upstream 1944299 4459317 ~ 4459423 (-) True LOC117596196
XR_004577366.1 other upstream 1946191 4461209 ~ 4461315 (-) True LOC117596197

Expression Profile