RNA id: XR_003403632.2


Basic Information

Item Value
RNA id XR_003403632.2
length 2625
RNA type misc_RNA
GC content 0.49
exon number 13
gene id LOC113535702
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2566757 ~ 2574471 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTAAAGCAACCCGGTGTGTATAAGTTTCGGTTTTTTAAGAAGCACAGAGGAAACAGAGCTGCTGTGTAAAAGCGCACACGAAGTCACATTCCTTGTTCATAATTGTTGATTGTTTACCGAGTTTCTGAGCTGTCGGAGATGAGCGCGAGCCTGAGTGAGCAGTATGAGGAGAAGGTGCGTCCGTGCATCGACCTGATCGACTCTCTGCGCGCGCTCGGTGTGGAGAAGGACCTCGCGCTGCCCGCCATCGCCGTGATCGGAGACCAGAGCTCGGGGAAGAGCTCGGTGCTGGAGGCGCTGTCCGGAGTCGCGCTGCCCCGCGGGAGTGGTATTGTGACGAGATGTCCACTcgagctgaagatgaagaggagcCGAGAGGAAGACTTCTGGCATGGAAAGATCAAGTACAAGAAAGATCATGATCAGGATCATGAGGAAGAGATTGACGATCCAGCAGATGTGGAGAAAAAGATTAGAGAAGCTCAGGACCATATGGCTGGGGTCGGCGTGGGCATCAGTGAAGAGCTCATCAGCCTGGAAGTGACGTCAGCTGATGTTCCCGACCTCACACTCATCGATCTGCCTGGTATTGCTCGAGTGGCAGTCAAAGGCCAACCAGAGAACATCGGAGAACAGATTAAGAGGCTGATCCGAAAGTTCATCACAAAGCAAGAAACCATCAACCTGGTGGTGGTGCCGTGTAACGTGGACATCGCCACTACTGAAGCGCTGAGGATGGCTCAGGAAGTTGATCCAAATGGCGAGAGAACCCTCGGCATCCTAACGAAGCCCGACCTGGTGGATAAAGGCACGGAGGACACGGTGGTGTCCATCATCCATAACGAGATCATTTACCTCACTAAAGGCTACATGATCGTCAGGTGCCGAGGGCAGAAGGAAATCATGGACCGCGTCTCTCTGCACGAAGCCATCGAGAAGGAGAAGGACTTCTTTAAAGACCACTCACATTTCAGTGAGCTGTATGATGAAGGCATGGCCACCATTCCCAACCTGGCTGAGAAGCTCACACTCGAACTCGTCCATCACATCGAGcGATCTCTGCCACGACTGGAGGAGCAGATTGAGATAAAGTTGGCTGAAACTCAGGGTGAACTGGACCGCTATGGCTCAGGGCCTCCTACAGAACCAGGAGAGAGGATCTTCTTCCTGATTGACAAAGTCACAGCGTTCACTCAGGACGCCATTAACCTCACGACCGGAGAGGAGCTGAAGAACCTCCAACATCTCAACATCTTCTCGAGCCTGCGGAGGCAGTTTGCTCTCTGGAAGAATCATCTGGACAACTCAGGAGAGACGTTTAAGAGGAAGATTGAGAAGGAGGTGAAcgagtatgaagaaaaatacCGAGGCAGAGAACTCCCAGGATTCATCAACTACAAGACCTTCGAGGTGATGGTGAAGGACCAGATCAAGCAGCTGGAGGAACCTGCCATCAGGAGACTGAAGGAAATCTCAGATCTCATTCGGAAGGGCTTCATCCAACTGGCTCAATCCAGCTTCTTGGGCTTCCCCAATCTCCTCAAAATGGCAAAGACTAAGATTGAAAACATAAAGCAGGCAAAGGAGTCGGAGGCCGAATCAATGCTGAGGACTCAGTTTAAGATGGAGCTGATCGTCTACACCCAAGACCACATGTACAGCGACACCCTGAGCACGGTGAAGcttgaggaggaagaagaagggaaacaaaaAATTTGCATTCCTCGCATTGCTTCGTGTAGTTTATACAATCAGTCAGACAACAGAGCCACTCTTGAGGAACTGATGCGTCACCTCAAGTCCTACTACAGCATTGCGAGTAAGCGTCTGGCTGACCAGCTGCCGCTGGTGATCAGGTACCTGCTGCTGCAGGAGTCGGCGGcacagctgcagagagagatGCTCCAGCTCATACAGGACAAAAACAACGCGGAGCAGCTGCTGAAAGAAGATCATGACATCGGCAGCAAACGCAACAACCTGCAAAACCGCCAGAAGCGTCTGTTGGAGGCCCGCAACTACCTGGTCAAGTTTTAGAGTCACATATAGTGTCTATTTTGGACATGGCGTTACTGTTGATCACTCGAAGcTGGATCAATCTTTCAATATTCTAGTATGTACATGTATTTACCCTATCAAGCTGTACTCCCCTCTTACtaccatatacagtactgtatgatCATACTGTCAACATAGCGtgtcataatattaaaaatacactatatggccaaaagtttgtggacacatgatcATCACATCAGTATGTGATTTTTGATCATctcattccagatgtagtcccctGTTGTTGTCATAATGActttcactcttctgggaaggcttttcactagatatTGGAgtgtggctttggggatttgtgctcattcagtcgcaagagcattagtgagatcaggcactgatgttgggtgaggtgttcagtggggttgaggtcctattcactgtgtttatgaGAAAATTCCACGGAGACAGCTCACTCTTGTGATAGATAGAAGTTAAAATGCTCTGATAGCTCAGAGTTCGTGAAGAGACACTGTTTCTCAATTTCAGAGTATGTCAGTTGTCTTGAGTCTATTCCTAAACATTTGCCATAAAAACTGAGTGAAATGA

Function

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU438216 lncRNA downstream 1505 2564712 ~ 2565252 (-) True G369927
TU438221 lncRNA downstream 3220 2562804 ~ 2563537 (-) True G369930
TU438217 lncRNA downstream 4299 2560880 ~ 2562458 (-) True G369928
TU438215 lncRNA downstream 6697 2559213 ~ 2560060 (-) True G369926
TU438211 lncRNA downstream 7948 2555979 ~ 2558809 (-) False G369924
TU438282 lncRNA upstream 99084 2673555 ~ 2678270 (-) True G369980
TU438290 lncRNA upstream 119678 2694149 ~ 2694577 (-) True G369988
TU438342 lncRNA upstream 196782 2771253 ~ 2790054 (-) False G370023
TU438341 lncRNA upstream 198155 2772626 ~ 2774635 (-) True G370023
TU438346 lncRNA upstream 200411 2774882 ~ 2775395 (-) True G370024
XM_026928963.2 mRNA downstream 23891 2523115 ~ 2542866 (-) True LOC113535562
XM_026928960.2 mRNA downstream 23893 2523115 ~ 2542864 (-) False LOC113535562
XM_026928961.2 mRNA downstream 24155 2523115 ~ 2542602 (-) False LOC113535562
XM_026928728.2 mRNA downstream 51739 2501030 ~ 2515018 (-) False LOC113535442
XM_034299960.1 mRNA downstream 54321 2501030 ~ 2512436 (-) True LOC113535442
XM_026929338.2 mRNA upstream 979 2575450 ~ 2583050 (-) True LOC113535812
XM_034300345.1 mRNA upstream 43155 2617626 ~ 2633096 (-) True efnb2b
XM_026929079.2 mRNA upstream 62864 2637335 ~ 2642686 (-) True cpo
XM_034299942.1 mRNA upstream 143586 2718057 ~ 2728695 (-) True atic
XM_026929212.2 mRNA upstream 172797 2747268 ~ 2757237 (-) True stk16
TU437816 other downstream 771533 1792187 ~ 1795224 (-) True G369586
XR_004577318.1 other downstream 967013 1541362 ~ 1599744 (-) False nrp2a
TU437448 other downstream 1289944 1276021 ~ 1276813 (-) True G369242
TU437316 other downstream 1651074 911553 ~ 915683 (-) True G369125
XR_004577324.1 other downstream 2339655 202654 ~ 227102 (-) True si:dkeyp-75b4.8
TU438365 other upstream 268741 2843212 ~ 2853211 (-) True LOC117596167
XR_003403643.2 other upstream 1882964 4457435 ~ 4457541 (-) True LOC113535829
XR_004577365.1 other upstream 1884846 4459317 ~ 4459423 (-) True LOC117596196
XR_004577366.1 other upstream 1886738 4461209 ~ 4461315 (-) True LOC117596197
XR_004577367.1 other upstream 1888637 4463108 ~ 4463214 (-) True LOC117596198

Expression Profile