RNA id: XM_026929207.2


Basic Information

Item Value
RNA id XM_026929207.2
length 3078
RNA type mRNA
GC content 0.42
exon number 24
gene id cfap221
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 4596430 ~ 4618808 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCAGTCGCAGGTGTAATTATGTAATGGCATTTATACTGTTGTTTATGCTGTTGTTTACATCTTTTTCCTGCcttaaaatgtgtttggagaAGAAATTAATGTTAACAGTTGGAGCTCAGTCAAAGTATTATTgtctaatcaaagtacaaatgacacaaaaggACTGAAGACAactAGTCTGAAGAGTGTTTTTCTTGAAGTCTGTTTATAGAGGAATGGAAGTCGTGCTGCAAACTCCGAACACTTTCTCCGAcaatgtgaagaaaaagaaaatcctaCCTCTGAGCCAACTGGTGGAGGAAACAAGGAGGATCTCCAAAGTCTCTCATCACCTTCTTGAAACTAAAAGTTTTGCCAAGGTTAAGAGCAATAATGTTGTTGAGGCTGAACCATCAGAACTGCATTTTAGTGGGTTTGAAGTGGGAAAGGATTACAAAAAGGTTGTGAAACTGATTAATATTTCTCCTGAGGTGATCCACGTCCACATTCTTCCTACCCAAACCAAGTACTTTCGAACTGAATATACACAAAAGAGTCGACTAGTTCCAGGACTTGCTCAGACTATTACTGTGCACTTCAGGCCAGACGAGTGGCGCTATTTTTTTGACAGCATCCGGATTCATTGCAAGGGGGAGGAGAACTTGCTGGTTACTATTCATGCTTATCCTGTCATTGATGATCTTAAAATTCCATCTCACATCAACCTGTTTCCTGTGCCATTGGGACACAGctccACTTGTGTGATTCCTCTGAGCTGCAGTTGTCCAGTAGACTTTGAGTTCCAGGTGCACTGCTTGAAGTCCCACGAGGCATTTAGCATATATCCTTTGTCAGGAATCATCCCAGCCAAAGGGAAGACAGATTTATCAGTGACTTTCACACCACAGCAATATGGAATGGCTGAAGTCACTCTACAGCTGGTCATCTCTCAGTTCAACTCAAAACCCTTTATCTGCACATTAACTGCGTCCTGCTCTCCTAATCTGACTCTAAAccaacagagagaaaatgaagagaatGCTAAAACTGCCAAAGACCTACCAACAGAAGAGGTCGTCTACCTTGTTTCTCCCAAACTAAAGGCTAAAGTGACACCAAGGAGAGAGAAGcacactaaaaagaagacaaaatcaGACCCATATACCCAGAGCTCTGATGTAGATCTTTCCAACCATGCTAGACTTGCTAAAATGCTAATTCAACACCAAGACAAAATGAGCTACAAAGATCTCAGAGAGGcCATGTCCCATACCAAGACTGCATACCAGACAAGACAGGTGAAAGAGGCTGCATTTGAAAATCAAGTTCGAGTAAATGCCCAAAAAGATAGAGCTAATCATCTTCAGTGGCAGGTGCATCTAGGTGACGATTTGGTCTCAgcagaacagaaaataaagattCTGAAGGAACAGGAAGTTGCAGCTTCTGAGTATATGatGAACAAAGACATGGGTGGCAGAAAGATGGATGTTGCCCAGATTTTTCCAAAACTGTCATCTCATCGTGTCGTTCGTTGTGCGGGACAGTGCCCTGATTGCACTCCTGTGTTCTACATTTATGGCAGTAGCCAACTGGAGGTCAGATGGCGAGTGCTTAGGCTCTTCCAACAAACTGTTCGTAAGGTCATTCTGCAAGTCCGAATGAATAAGAGGCTGCTTCTGTTGCGAGAACTACCTTCCAGTACAAAGGGGCAagtcagagaagaaaaaaacaaagGCATAGCTGAAAAGAAACAACTTTTAAATCTGTCACCAGAAAAGCTGCTGCCCTTCATATCGCCCATCTTTCCTTCAACAAACCACCCTGACGAACTTgcCATTAACAAAATTGGAAATGTTCATGTGGGGCTGATTGAAGAAGATTTGACTTCCACCATTCCATTTTTTAATCTAAAGGTTCCTCAGCATTACAAGCTAATGGGCTATCAGGAAGTTACTGTGTATGATTCCAAAGCCTCTTTTGCCCACAAAAATCAGTGTAGGCTGCTGCGCACAGGAGCACAGAATGAACTGCTGCCCATGGTGATGTCTCCTGAGCTAAACTCCTACCAGGAGAAAGAGCTGCAGGAAGAGGAGAGACCAGagccagacctcaaccccatgcTCTGTTTCAGGACTCCTCGTAGTGTGTTAAATCCACAAAACGCCCACCCTCTCAGGATCTTTAACCCTGCTCCGAGTGTGTGTGCCTTCAAATCAACACCATTATACCTAGAGAGTGACCCAGAGTTCCACCTTTGTCCACTGCCAAGACACACCATCTGCAAAGACTATGTTGTTGGAGTCCATACCAACAGCACTCAAAAGAAGTTTTTAGACAGAGAGGACATTATAAAAGGAACCATGATATGGAAGAAGTTTCCCTGTCTGGCACTGAATACCGTTTCCTCTGTTCCAGCACAAACCAGCAGTCAGAACCCACGCATGTGTGACCCTTTCAATAGTTTGGTGCTGCCCCTGGAAGCCCCACCATCACTGAAGGACCTTCCTGATAACATCAGAGAAGAAATTTCTTTTGGAGAGGCTGAAGGTGCAGGGGTCAGTCTTAATCCTGACATGGTTCAAGCTGAGTTTGCAGCCTTTGAAAATTCACCTAAAACATTGAAAGAAGATTCCATGAAGGATGACCGAGAAACACTTGAAAAGCCATTGGAATCAAGTTTGAAATCACAAACCAACCAACTGGGATCCAAAGTCTTAGCACGGATGAAATATATGAAATCTATGAGCAGGAATAGTCTACTTTCACATAACAGATAATAGCAGTTTTCCCTACatagttaaaataaaagtgcaaattTGTGTTAAGatttaatcaaatcaaataaaaacttattttatgttttaaacacttaaataaattattttgttggAGCTGTATGTGTTTAGTTTAAACTGCAGCATGTGAtgggattaaatttacatggggTCCTGGGGTAATTTTCCATTTTACAGGCGTTCCTCTATGACTTTATTTCAGTCCGGATTGGCCCTGTGTTTTTTCTAAGGCCTCGTATGAAAAAATTATAGGCTGAATTGCCTactgtaatgaaaaataaaaaggggaTGCTTCTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU438835 lncRNA downstream 149324 4446458 ~ 4447106 (-) True G370468
TU438789 lncRNA downstream 454302 4141922 ~ 4142128 (-) True G370425
TU438781 lncRNA downstream 609808 3986205 ~ 3986622 (-) True G370418
TU438779 lncRNA downstream 612851 3983111 ~ 3983579 (-) True G370416
TU438778 lncRNA downstream 613490 3981710 ~ 3982940 (-) True G370415
TU439062 lncRNA upstream 186072 4804880 ~ 4811748 (-) True G370665
TU439059 lncRNA upstream 277419 4896227 ~ 4914035 (-) True G370663
TU439109 lncRNA upstream 427232 5046040 ~ 5046246 (-) True G370699
TU439112 lncRNA upstream 440045 5058853 ~ 5059054 (-) True G370702
TU439117 lncRNA upstream 443336 5062144 ~ 5062436 (-) True G370705
XM_026928684.2 mRNA downstream 78442 4511270 ~ 4517988 (-) True cnpy3
XM_034300309.1 mRNA downstream 91691 4488149 ~ 4504739 (-) True LOC113535753
XM_034299954.1 mRNA downstream 978310 3611719 ~ 3618120 (-) True LOC113535432
XM_026928713.2 mRNA downstream 979538 3611719 ~ 3616892 (-) False LOC113535432
XM_026928711.2 mRNA downstream 1425945 3083070 ~ 3170485 (-) True gpc5a
XM_026929095.2 mRNA upstream 393 4619201 ~ 4627241 (-) True knstrn
XM_026932180.2 mRNA upstream 450552 5069360 ~ 5112747 (-) False brat1
XM_026932179.2 mRNA upstream 450552 5069360 ~ 5112747 (-) True brat1
XM_026931934.2 mRNA upstream 634885 5253693 ~ 5268198 (-) True LOC113537465
XM_026931935.1 mRNA upstream 634885 5253693 ~ 5258014 (-) False LOC113537465
XR_004577360.1 other downstream 71646 4524502 ~ 4524784 (-) True LOC117596183
XR_004577367.1 other downstream 133216 4463108 ~ 4463214 (-) True LOC117596198
XR_004577366.1 other downstream 135115 4461209 ~ 4461315 (-) True LOC117596197
XR_004577365.1 other downstream 137007 4459317 ~ 4459423 (-) True LOC117596196
XR_003403643.2 other downstream 138889 4457435 ~ 4457541 (-) True LOC113535829
TU439054 other upstream 224521 4843329 ~ 4889381 (-) True G370658
XR_004577341.1 other upstream 915607 5534415 ~ 5547032 (-) False LOC113537235
XR_003403738.2 other upstream 915607 5534415 ~ 5547032 (-) False LOC113537235
XR_003403737.2 other upstream 915607 5534415 ~ 5547032 (-) False LOC113537235
XR_003403739.2 other upstream 915607 5534415 ~ 5547031 (-) False LOC113537235

Expression Profile