RNA id: XM_026929212.2


Basic Information

Item Value
RNA id XM_026929212.2
length 3760
RNA type mRNA
GC content 0.39
exon number 8
gene id stk16
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2747268 ~ 2757237 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCCTGAAGACGTCAGTGCTACGTCATAGCGTACCCGGAAGTGCGTGTCTGTAGTGTACGCGGAAGTATCACGCTGCTGTAGCTGAATAGCGGAGGAGGTCGGAATCCGTAAATAAAGttcTGCTCGATGAGTGAGCGATGCTAGGTCGAGGATGGGACATGCACTGTGTATCTGCTCTCGCAGTTCCATCACCATCGACAACAAGAGATACTACTTCATCCAGAAACTCGACGAGGGCGGGTTTAGCTACGTTGATCTGGTAGAAGGAGCTCAGGACGGCCGTTTCTATGCTCTGAAGCGAATCCTTTGTCATGACCGGGAGGGACGGAAGGAGGCACAGACGGAGGTGGAGATGCACCGACTGTTCAACCACCCCAACATCCTGAGTCTGACGGGCCACGCCTTCATGGAGCGTGGAGGAAAGACCGAGGCCTGGCTCCTCCTGCCCTACATCAGTAAAGGAAGCCTGTGGTCCGTCCTGGAGAAGCTGAGGGAAAAAGGTAGCTCCATGCCTGAGAGCCGGATCCTGCACATTTTCCGTGGCGTCTGTGAAGGTCTCAAAGCCATCCATGACAAGGGATATGCACACAGAGACTTGAAGCCCACTAACGTGCTCCTGGAGGAGAACGACAAGCCGGTGCTGATGGACCTCGGTTCTATGAACAAAGCCCGGATTGAAGTGAAAGGCTCCAGAGAGGCCATGACTGTGCAGgaCTGGGCAGCTCAGAGATGCACCATCTCCTACAGAGCACCTGAGCTTTTCAACGTGGAGAGCCACTGTATCATTGACGAAAAGACAGATATTTGGtcatTAGggtgtgtactgtactgtatgatgATGCTCGAAGGACCGTACGATATGGTGTTTCAGAAAGGAGACAGCGTCGCCCTGGCTGTCCAAAACCCAGTTGCCATTCCACAACCGTGCAgCTACTCCGAAGGACTGCAGACACTCCTGAGCTCCATCATGGTGACGAACCCTCAGGAGAGGCCCAACATCGACTGGGTGCTCGAACGGGTCAAAAACCTCCAGAGCTCAGATGGAGGAGCGATCGAAACCGACAGAGTATGACAAAGGGAGCATGATTTTTATCTTCTATctagactgttttttttcccccttactTTTACCTCATTAAACACATTGAGAACACATGCTCCAAACACaaattctctcacacacacacctgcatcaGCCAGGATGAAGGACGTCATTGATTGCGTTGAAGGTTGTCAAAGTTGGACCATGCAAATTTGGATTTTATGTTAGCACTAAAGCTAATAACGTTTCTCCACCTGCTCAAGTGTCCCTGTGGGTacaaggggcggagcttaagttaAATTTGATGATCCAGTCACAAAATTGACCATGTGACATCACAACTAgcctttttaatcatttctttgaCTCAGTGTACTGCTTAGCATAAAATAATAGTTTAGCATATTGAGTTATTGAGCTATTGAGCCgtctttttaaattaatctgtCTGACATTAACATTACGTCTGTCGCAGCTAACTACCGATAATGAAACTATTATGCTGTTTAATTAGAACTAATTTGCTAGAAGctagtttaaattaggctacttaTTATATTTTGTACTTACGACAGGGAACCAACTGTGCTAGCCGTCTGGTTAAAATTAGGCTAGTTATTACATTTTGTGGTTAAGAtcagtagctagctaacattaaattAACTATGGTATATGATAAGCATTATAGAATTTTCAATATCATACTAACAATTAAGCATAACTAGAGGTCGTAAATTACGTAGCTAGCCAGTTTCTTTAACAAACTAGCAAATGTTAggcttattatattatattatattatattatattatattatattatattataatattatataatatatattttatattatattatattatattatattatattatatattttgataGCAAGCTTATTAACAGTAGGCtagtttttatatttgatgACCAGTATTTTATGCTAAACTGTACATCGAGCGAAAGGTACAATTAAGATAATTACGATAAAAGAAGTGTCTTATTCTGGAAATTAAGTATCTgttcttattttatttgtagaaaGAAAGGTTAAAGTTGAAGTACGTATGTAAACAGTAACAGTTACAGTGTGTACGTGTGGAAGACGAACCTGGATTTCgtgaaattttaaaatgacaaagcGTCTAATAAGGCCAGCGGGCATTTGCCATGTTAGCCAGTGTTGCATTTTATGACAAAACAGCAGCATCTAGGACTGGAATGATATGGCATATTGTGTAGTTGCGCAGGTTCGAACTCGCTGATATTGACTGACATCTCTGGAATTCCCACctccttcctccatctctcGGCCAGTGCTTTGTCTCAACTTGATTTTCCTCACTTTCTGTCACGGTACATGGAAAATGTATGTTAGACTTGGCTAACATTAATATATAGTTAACGTCAGTTAGCTATATTAATTAGATACACACCAAaaaattttgtccaattttttttatttactcttcaTTGCATTTTTACTCCCGTCCAGTTTCCACATTATTCCTCTTAGGGGTTGTCAGGCTCAATCCTGTGATATCTTCAATATATCGCCGCGGCCTTAGTGAGCGTTGATCGACAGTACGGCTGCAGTATTAATTCGTAAAGTAACAGTATAAAATGCAAACGGTTTCTAAATGTGATTTTGATAACAGAGCAAGTGAGCAGTGACAATGTCGTCATTCGCTCTGGAGTGTGTATCATTGTGTTTTCATTTGCtgcttttttaatgtgtgtgttttatgctcAAGTGTGCGGTTGAATTTTTCTTAACTGGATGATGTGGTACACGGGATCATTGTGTTCAACAGGCGTGTGCTGAAAATTTCTtcattacatcattttaattCCCCGAAGTTTTATTGAATCTTTTGACACTAATATACAAATGTTCATGTCTCATCGCAactttttaaccaaaaaaacatgttggtaGGCATTGTATTCAGGACACGCCATTCCGTGTATAAAATTAGCTTCGTGGGGGGGAAAAATCACTTGAATGGGAAAGGACACGGAAGAACTAGCTTGGAAGGAGTAGCCAATAGAAACTAAGAAGGCGGGGCTTTTGCTACTTTAAAAATCAGTTAAAGTTTATGAAGATTGGCCACTTTAGGCTCCCGTAGCTCTActttataacattatttattaccGAAAGAATATTTACAAGATTTTCAGACTTACGGTTGATTTAattgcaaatttaaaataaagtgccaCATTACATATGTTTTTCTTACATAAAAGTAATCTACTGTTACCTAtcagcataatttttttttttttttttttttttttttttgcatagatCCTCTTAAAAGGGTCTTTTCTGGCAATTAAGTTAAAATCACATCTGCTCTAGTTAGTAATAAATTATTCCTCAGGCAGAGAATAACCTCTGGAGATAGTTTAAAATCCATGATAACTATAATGTGGTGCTGAGTATCACAATTTGCTGTGTATAAATGAATATCGGTATATGCACACTTATATTTGGGAGCTGCGTGTAATTtatgtcattttgttgtttgtttgttttttttccagcagttCTCAAAGCTTAATGTTAATCTGAGGATGTTAATTTGCAGTAAATTTTACAAAgtcatattgtattttattttatttgtatgtatttgaACAGAGAATCATGTCTGTAAATATGgctcttgtttttatttcataatgattaaaaataattcatgctTTCAa

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08856 STK16; serine/threonine kinase 16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU438290 lncRNA downstream 52691 2694149 ~ 2694577 (-) True G369988
TU438282 lncRNA downstream 68998 2673555 ~ 2678270 (-) True G369980
TU438216 lncRNA downstream 182016 2564712 ~ 2565252 (-) True G369927
TU438221 lncRNA downstream 183731 2562804 ~ 2563537 (-) True G369930
TU438217 lncRNA downstream 184810 2560880 ~ 2562458 (-) True G369928
TU438342 lncRNA upstream 14016 2771253 ~ 2790054 (-) False G370023
TU438341 lncRNA upstream 15389 2772626 ~ 2774635 (-) True G370023
TU438346 lncRNA upstream 17645 2774882 ~ 2775395 (-) True G370024
TU438351 lncRNA upstream 26035 2783272 ~ 2790676 (-) True G370028
TU438334 lncRNA upstream 61366 2818603 ~ 2821314 (-) True G370019
XM_034299942.1 mRNA downstream 18573 2718057 ~ 2728695 (-) True atic
XM_026929079.2 mRNA downstream 104582 2637335 ~ 2642686 (-) True cpo
XM_034300345.1 mRNA downstream 114172 2617626 ~ 2633096 (-) True efnb2b
XM_026929338.2 mRNA downstream 164218 2575450 ~ 2583050 (-) True LOC113535812
XM_026929206.2 mRNA downstream 172797 2566757 ~ 2574471 (-) True LOC113535702
XM_026928808.2 mRNA upstream 1732 2758969 ~ 2767493 (-) True tuba8l2
XM_034299928.1 mRNA upstream 11392 2768629 ~ 2770657 (-) True LOC113535758
XM_026928790.2 mRNA upstream 40031 2797268 ~ 2804129 (-) False LOC113535480
XM_026928789.2 mRNA upstream 40031 2797268 ~ 2804129 (-) True LOC113535480
XM_034300419.1 mRNA upstream 51080 2808317 ~ 2811609 (-) True LOC113535756
XR_003403632.2 other downstream 172797 2566757 ~ 2574471 (-) False LOC113535702
TU437816 other downstream 952044 1792187 ~ 1795224 (-) True G369586
XR_004577318.1 other downstream 1147524 1541362 ~ 1599744 (-) False nrp2a
TU437448 other downstream 1470455 1276021 ~ 1276813 (-) True G369242
TU437316 other downstream 1831585 911553 ~ 915683 (-) True G369125
TU438365 other upstream 85975 2843212 ~ 2853211 (-) True LOC117596167
XR_003403643.2 other upstream 1700198 4457435 ~ 4457541 (-) True LOC113535829
XR_004577365.1 other upstream 1702080 4459317 ~ 4459423 (-) True LOC117596196
XR_004577366.1 other upstream 1703972 4461209 ~ 4461315 (-) True LOC117596197
XR_004577367.1 other upstream 1705871 4463108 ~ 4463214 (-) True LOC117596198

Expression Profile