RNA id: XM_026929215.2


Basic Information

Item Value
RNA id XM_026929215.2
length 1708
RNA type mRNA
GC content 0.52
exon number 4
gene id klf7a
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 1915663 ~ 1937075 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTGAGTGGCAGGTGCGCGCGCGCCTCCTCTCTGCTCGTTCAGTCGGTACGCGCGAGGCGGCCGGCGCGCGATTCCTCTCCCATCACCACCATCTCCATCTCAGCGCTCTGTGCTGGTACCTCTGCTAACTTTCACTTCGTCTTTTCTGCGTTTATTTTAACGATTTATTcctttcatttgaaaaaaaaaaaaatcgaccTCCCTTGAGcgtttagggttttttttttagtatagaGGAGAAAAGTGATGCTGAATGTTCCCGCGGGACTCTGAGGACATTTTTTCCTTGGATTTCTGGCGTCTCGCGTTAGCATCATCAGGAGCATCATCATGGACGTCCTGGccaactacagcatcttccagGAGCTGCAGCTCGTCCACGACACCGGCTATTTCTCCGCCATGCCGTCTCTGGAGGAAAACTGGCAGCAGACATGTCTAGAGCTGGAGCGCTACCTTCAGACAGAACCCAAGCGACTATCAGAGCTCTTCGAAGATGAACTGGACCGCCTGCTCTCTCCAGACTTCATGGAAGGACATGGAGAGGACGAATCGCTCAACCCGTCGCTCTTCAGCCTCACGTCATCCCCGCTGCGCCTCGACGGAGAGCCGCTGACCTCGCCGTCCACCCCGGACCCCTCCGACCTCAGCACAGGGGTCGACGTGGCCCAGCTGAACGCGCTCACCTCTCTGACTCCGCCCTCGTCCCCGGAACTGGAGCGCCATTCTCTCAAGACCGCCCACACTCTCTGTACCACAGCCGACGGGACTCTGATGCTGAAACTGGCCGTGGCGCGGCCGCTCTCGCCCGGACCCAGCGACGGCGAGCAGGCGAGCGGCACCGCAGGGGGCAGAGACTCAGCCGACAGCAAGAAGAGAGTGCACCGCTGCCAGTTCGACGGCTGCAGGAAGGTGTACACCAAGAGCTCTCACCTCAAAGCACACCAGAGGACACACACAGgTGAGAAACCCTACAAGTGCTCATGGGAAGGCTGCGAGTGGCGTTTCGCACGCAGCGACGAACTGACGAGACACTACCGCAAACACACGGGCGCCAAACCCTTCAAGTGCGCACACTGCGACAGGTGCTTCTCGCGGTCGGACCACCTGGCGCTCCACATGAAAAGGCACGTTTAAATAAAAGGACGACGAGTCCGAGAGAAAAGCggacaaacagataaaatataGAAAGGAGGACTCGGGAACGAGGGGAGCAAATCCGAACGCTTTTTTTACGAGACGAATCAGATTCTCGGTTCCGGTTCCGGTTTGGAGGAGAACTTTATAAAACTGATTAGGAATTTAGACCCAGTAAACACACTGACTCAGCTAGGAGTTTTCTCCTGAACATGGAACGGTGTGGaatgtattttcatttcatagCTAGTACGTACAAAACCGGAGGACTGTTGACGAACAGGATCACTTCTGGAGCTTTggggtttttgttgttgttttttttttttttttttttgagtggatAAATACGAAGAACATCTATTGacacaattcttttttttgtttgagctATAAGACTCTTCCTGTTTTACGGGCACAATTAAGAAACATTTCTTGCACAAGCAGTCGAGGATCAAACGCCGAAGACAATTTTACTCCATCGGGGGACGAAATGTCAGAtttgttattgttaatgttattgCACACATCATGAACAgtgctatttatttatgcttcttgtttgttgtt

Function

GO:

id name namespace
GO:0021634 optic nerve formation biological_process

KEGG:

id description
K09207 KLF6_7; krueppel-like factor 6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU437880 lncRNA downstream 26289 1888504 ~ 1889374 (-) True G369641
TU437853 lncRNA downstream 61010 1854440 ~ 1854653 (-) True G369618
TU437849 lncRNA downstream 61881 1853349 ~ 1853782 (-) True G369617
TU437804 lncRNA downstream 88599 1824204 ~ 1827064 (-) True mdh1b
TU437828 lncRNA downstream 110361 1803109 ~ 1805302 (-) True G369596
TU437914 lncRNA upstream 81640 2018715 ~ 2021315 (-) True G369663
TU437910 lncRNA upstream 81843 2018918 ~ 2021315 (-) False G369663
XR_004577364.1 lncRNA upstream 178503 2115578 ~ 2144451 (-) True LOC117596194
XR_004577298.1 lncRNA upstream 249571 2186646 ~ 2187942 (-) False LOC117596130
XR_004577297.1 lncRNA upstream 249571 2186646 ~ 2187942 (-) True LOC117596130
XM_034300370.1 mRNA downstream 6289 1895048 ~ 1909374 (-) False LOC113535707
XM_034300371.1 mRNA downstream 7536 1895048 ~ 1908127 (-) False LOC113535707
XM_034300369.1 mRNA downstream 9157 1895048 ~ 1906506 (-) True LOC113535707
XM_034300372.1 mRNA downstream 13584 1895048 ~ 1902079 (-) False LOC113535707
XM_034300044.1 mRNA downstream 82934 1826145 ~ 1832729 (-) False mdh1b
XM_034300285.1 mRNA upstream 319346 2256421 ~ 2259148 (-) True LOC117596168
XM_034300269.1 mRNA upstream 324214 2261289 ~ 2271653 (-) False LOC113535651
XM_034300270.1 mRNA upstream 324214 2261289 ~ 2271643 (-) False LOC113535651
XM_034300271.1 mRNA upstream 324214 2261289 ~ 2266153 (-) True LOC113535651
XM_026929032.2 mRNA upstream 345716 2282791 ~ 2331670 (-) True LOC113535598
TU437816 other downstream 120439 1792187 ~ 1795224 (-) True G369586
XR_004577318.1 other downstream 315919 1541362 ~ 1599744 (-) False nrp2a
TU437448 other downstream 638850 1276021 ~ 1276813 (-) True G369242
TU437316 other downstream 999980 911553 ~ 915683 (-) True G369125
XR_004577324.1 other downstream 1688561 202654 ~ 227102 (-) True si:dkeyp-75b4.8
XR_003403632.2 other upstream 629682 2566757 ~ 2574471 (-) False LOC113535702
TU438365 other upstream 906137 2843212 ~ 2853211 (-) True LOC117596167
XR_003403643.2 other upstream 2520360 4457435 ~ 4457541 (-) True LOC113535829
XR_004577365.1 other upstream 2522242 4459317 ~ 4459423 (-) True LOC117596196
XR_004577366.1 other upstream 2524134 4461209 ~ 4461315 (-) True LOC117596197

Expression Profile