RNA id: XR_004577341.1


Basic Information

Item Value
RNA id XR_004577341.1
length 3864
RNA type misc_RNA
GC content 0.45
exon number 11
gene id LOC113537235
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5529992 ~ 5547032 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTTCCTGTTTCTGCAGGGGCATTGTGGGATATCAGTCAGTAGAGTCCTCCCGAATTTGACTGAAGGAAATGGCAACCAACATTGAACAGATTTTTCGGGattttgtaatgaataaaataaaagaaatagaaGATGAAAGCCAGGATAAGAGCCATACAGACCAGGTGGAATCTAATAATGGGGAGTTGCACTCTGACCAAGGGAcaggaataaataaagaagcacCTCAGGTTGACGCACTGAGCCTAGCCACAGataaagtCTCAAACGCTACATGCCAGGGCAACAGTGGCAAAGAAGAATTTAATACTAAACACAAGAAAtctaaaaagcacaaaaaacacaaaagcaaaaagaagaagaagaaacataaGGAAGTAAAGGAGAGCAGCTCAGAATCAGAGTCTGGTGGAGAGACACAAGAAAGtgtaaagaaaaagaagaggaagaaaaagaagaaacataAACAgggagaaaaagggaaaaagttTGATTCACAGTCTGGTAGCTcttctgaatctgaatctgagtCTGAGTCTGAAATGAAACCTTTAGGTGTGACTGCTAAAACCTTAACTGGGAAGATGCCTCAAGATTTACCTGACATAATTCCTAAGCTTGAGACTGcttctgaaaaacacaaagaaagtaaaaaagcCAAAAGAAGCTCTAGTCGCACAAGGACCTCCCAGCAAGACAAGAGTTTGAGAAGGCAGCGCTCCCGTTCCAGCTCAGGCAAACAGAAAACAAGACATAGATCCAGGTCCCGTTCAGCGAGACGATCTCCGAGATCAAGGTCTAAATCACTTTCAAGGAAAAGTCCAAGAAGAGAGTCTACACAGAAAAGATGGAGAAGTAGATCCAGGTCACATTCAAGATCACAACGACGTAACAGACGGTCCAGATCTTATTCAGCCAGAAGAGGAAGACATTCACGATCCAGGTCGCGGTCTAGACAAAATAGATCAAGGTCTAATGTAAGGAAGAGCAGGAGATCTCGGTCAAAAAGTAGGTCTCGTTCACATCATTCCAGACGGTCTAGGTCTCGGGGACGGAACAGGCATTCTACGTCAAGTTCCCGGTCAAAATCCAGATCTTTTTCAAGCGATAAGCATcctgagagtgagagacaaaagaacagaacagCTGCAGAAATAAAGCATGATGATAGCGTTctaaacaaaaatctaaatgaagcagaaaatggagacaaagaaaaaagtcagaCTGTGCCAGTGAACCCCTCTGCCAGTATTATTAAAGATGGTGTTATAAATGATGGGCCAGTTAATAAACTTGCAGGCTCATGGAAACCGATTCCTTTCTTGGATGCAGGTGTGTCTGTTTCTGGCTCCTCTGAGACCAACCCTACAGTGAAGTGCATTACACCCACAATGCCTTTGGATATGAAAGATGTTTCAGCATATACCTCAGGTGGGTCTGGAGACCTTCTCAGcactgaaaaggaagaagacaTTTCTAGTGCTGAACTGAAAGACTCCcaaatatttaaacagaagtCCGTATCACCAAATCAAAGGCACTCAAAATCACCTTCAAGAAAAAGATCAACATCTAGTTCTCCTTTTAAACGAAGGAAGTCCAGATCATCCTCTAGGAACAGCAGGACGTCTCCTTTGCAAAGGAAAAGATCTAAGTCCAGAAAACGGTCTAGGCGTTCTAAATCCAAGTCGCCCAAAAGGAAAAGGTCAAAGTCCCATTCGCCAGGACGCCGGAGAAGATCTAGGACCTCGGATAGAAAGCGATCAAAATCAAGACACAGGTCTCGCTCTAAATCCAGAAGGTCTAGGTCTGGCTCACGCCGGAAAAGAGGTGGTTTCAGGAATCGAATGTTTAGTCAGCGGGATCGGTGGAAACGAGAACCGAGCCATTCTCCTGTTGTCATCCTGCGGAAGAAAAGGTCGACCTCTCGAACTCGCCGTAGTTCTAGCAAGACACCTCCGCGCCTTACTGAGCTTgATAAAGAACAGTTGCTTGAAATTGCCAAGGCAAATGCTGCAGCTATGTGTGCTAAAGCTGGTATGCCAATTCCAGAGAGTCTGAGGCCAAAAACCATCCTTCAGTTGCCCTTGCCAGCCCCAAATCCCACGCCATTGTCCTTACCCCTGCCCCTACCTGTTAATCTCCCCATGGGAATACAAGGGATGTCAAACATGACCATGAATGCTGCTGTGGCTAGCATGACTGCTGCCACCATGACCGCAGCTCTATCTGGCATGAACGCACTTGCTGCCGTGCCACAGTTGGCCCCCTTGCCCACAATAACCAACAAGCCTCCACCCTCAGCAACACCAAATCTGAATCTGGTCACTATCGAGGAAgcgaaaaaaaaattggcaaagCAAGCAAACAGCTACAGCATCAAGGAGCTCACAGAAAAATGCAAAAAGATTGCAGAGAGTAAAGAGGAGATGGCTATTGCAAAGCCACATGTTTcagatgatgaggaagatgacAGGCCCTTCGGGGGAGTTGCCCTTAAGGAGAATAAGGGCATTACATTCAGTCTCACTAACCCCTCTGTGAAGCCAGCAGTAAGGTCTGAGGCTGCTTTTGCCAAGGAGTTCCCGGTGTCTTCAGGTTCACAGCACCGCAAAAAGGAGGAAGATGGAGTGTATGGAGAATGGATGCCTGTGGACAAAAAGACTGATAAAGCAGGGGCTCCGTCAGCATCTGCTGGGGCGGAGGATCAGAGCAAAGCCAGTGACAGTGTTTTCCCTGAGGCACCCTCACAGCCAGTGGATATCACACTTGCAATTAGTGAAAGGGCAGTGGCACAGAAGAGACTGGCAGAGAATCCCTTTGACATCAATGCCATGTGCATGCTTAATCGTGCACAGGAGCAGGTGGATGCTTGGGCCCAGTCCAACACAATCCCAGGTCTATTCACTGGTTCTACAGGTGCTCAGGTGCTCTCATCTGAAGAGCTGTCCAACAGTGGCCCACAGGCTTGGATCAAGAAGGTGCATTGCAAGAGGGGCATCACACCTCAGTGATTGACTATAGACTACTTAGTAAGTTTTCTTTGAAAGATGGGAGGAAGGAAGAGCACCTGAAGGTCAGTCCTTGTAGCTGCCTTGTTGCCATGGTCACTGTCAGGCCCCTTCTATTCACGTCAGATGCACAGCCGATGATGAGGGCCTAGGTACGTACGTCATACAGCACCCATATTTCTATTCATGTGGATTTGTCTCCACTCTAATGAAAACGTTTCTgccatgcctgtgtgtgtttcaactGAACTGGTGGGGTGGTAAGGTTGGTTTTGATTCCTCTGTCACAGgaaacaatgacattttttatatatttatatgactTTTGTAGCATGATAATTTGTAGTCTTTTGTTTAAACTATGCTTATGCAATTAGGACCTGGTAAGATAAAACATTCACTTTAAAATATAGCTTTGGGAATGCTGCTTTTTCAGATCATTCTTAAAATCTAGATGtaaggttttttcttttattatttgagATTTTGCTGATATCTTTAGGTAACCCCATGGATCCAGAAGATAGCTAGTACAGTTGAGTGGTCCTTAGTTTCAGTGCAGCTCAAGTCCATTCTTGATCTGTGACCTCTTACTATTTCCTTTGtgcttctttctctccctgtcttttctctctcgctttctcgctctttctctctctgtctctctgtctctctctctccactcctTCCCTCCGTCTTCTGCCCATATCTGTATGCCTTTCAACCAGGACCAATTCCTGCGTGCTGCCCCAGTCTCGGGAGGCATGGGAGAGCTGCTGATGAAAAAGATGGGTTGGCGTGCTGGAGAAGGCCTTGGCAAACACAGAGAAGGCACAGTGGAACCCATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577342.1 lncRNA downstream 16035 5510716 ~ 5518380 (-) True LOC117596170
TU439411 lncRNA downstream 26046 5508102 ~ 5508369 (-) True G370942
TU439410 lncRNA downstream 28098 5506112 ~ 5506317 (-) True G370941
XR_003403776.2 lncRNA downstream 104983 5415626 ~ 5429432 (-) False LOC113537576
XR_004577293.1 lncRNA downstream 104983 5415721 ~ 5429432 (-) True LOC113537576
TU439645 lncRNA upstream 333444 5880476 ~ 5885612 (-) True G371117
XR_004577356.1 lncRNA upstream 339814 5886846 ~ 5891797 (-) True LOC117596178
TU439651 lncRNA upstream 345294 5892326 ~ 5895688 (-) True G371121
TU439680 lncRNA upstream 446457 5993489 ~ 5994747 (-) True G371147
TU439686 lncRNA upstream 450971 5998003 ~ 5998159 (-) True G371152
XM_026932107.2 mRNA downstream 121642 5409611 ~ 5412773 (-) True urp2
XM_026931711.2 mRNA downstream 139603 5389798 ~ 5394812 (-) False LOC113537294
XM_026931789.2 mRNA downstream 193894 5331920 ~ 5340521 (-) True LOC113537353
XM_026931790.2 mRNA downstream 193899 5331920 ~ 5340516 (-) False LOC113537353
XM_026931938.2 mRNA downstream 218220 5305078 ~ 5316195 (-) True LOC113537467
XM_034300024.1 mRNA upstream 2521 5549553 ~ 5557090 (-) True wu:fa56d06
XM_026931827.2 mRNA upstream 42740 5589772 ~ 5596095 (-) False n6amt1
XM_034300092.1 mRNA upstream 42740 5589772 ~ 5595936 (-) True n6amt1
XM_026931654.2 mRNA upstream 349304 5896336 ~ 5908867 (-) False jam2a
XM_026931653.2 mRNA upstream 349304 5896336 ~ 5908867 (-) True jam2a
TU439054 other downstream 645034 4843329 ~ 4889381 (-) True G370658
XR_004577360.1 other downstream 1009631 4524502 ~ 4524784 (-) True LOC117596183
XR_004577367.1 other downstream 1071201 4463108 ~ 4463214 (-) True LOC117596198
XR_004577366.1 other downstream 1073100 4461209 ~ 4461315 (-) True LOC117596197
XR_004577365.1 other downstream 1074992 4459317 ~ 4459423 (-) True LOC117596196
XR_003403780.2 other upstream 395397 5942429 ~ 5952313 (-) False LOC113537623
XR_004577328.1 other upstream 472655 6019687 ~ 6033393 (-) False tpp2
XR_004577329.1 other upstream 811607 6358639 ~ 6363203 (-) False LOC113537742
XR_004577289.1 other upstream 1511803 7058835 ~ 7068467 (-) False LOC113537271
TU440391 other upstream 1511803 7058835 ~ 7068531 (-) True LOC113537271

Expression Profile