RNA id: XM_026931654.2


Basic Information

Item Value
RNA id XM_026931654.2
length 1703
RNA type mRNA
GC content 0.43
exon number 10
gene id jam2a
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5896336 ~ 5908867 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGGGACAGGCTAGAGGAGAAAGCACAAGTCGTGCCTCGGATTAAAGGGACCTGTctggtgtatacacacacacacacctgtttggAGAAAGGAAAACATTATAAACTCTCGGACAGACTCTGGTTATCCTACAAAGCTTCAAGAGCTCCTGTACTCCTCTGGCAACACACTTTTAAATCAGGATAAAATGAAGATTGCTGTTTTTCTGCCAGTACTTTTACAGCTGTTAATACAGAgtGTTCCTGTTGCTCCTGTCACAGTGACCACCTCCAGCCCCATAGTAAAAGTGGAGGAATACTCAGAGGCCAAGCTTTCCTGTGAGTTTAAGACAGAGAAAGATCAAAGTCCTCGCATCGAGTGGAAGAAAAAGGATAAGGACACCTCCTTTGTCTACTTTCATGGCAACTTCACAGGACCTTTTGTGGGACGTGCAAAGATTGAAGGAGCAACAATAACATTACAGAAGGTGACACAGAAGGATGCTGGAGAATATCGCTGTGAGATCAGTGCTTCTGGTGACACAATCCAGCTGGGAGAGACCAATATCACTCTAAAAGTGTTGGTACCTCCACACATCCCGACCTGTGAGATCCCGAGCTCTGCGCTGACAGGATCTGTAGTGGAGCTGCGCTGTAGGGACCAGTACAGTATTCCTCCGGCAAGCTACACCTGGTACAAAGACAAGAAGCCTGTCTTTCCACCGCGCCATACCAATGCCTCTTACTCTGTCAACAAGGAGACAGGCATTCTTACATTTCATACAGTTACCATAGCCGATGCAGGACTGTATCACTGTGAGGCCAACAATGGGGTTGGAAAGTCAAAGAGCTGTGTAGGAAATCACATGACAATTGATGATCTAAATGTTACAGGGATCATAGCTGGGATTGTAATTTTGTGCCTGATCATAACTTTATGCACTCTTGGGGTCTGTTATGCCCACCGACAAGGCTACTTTAACCGACACAGAGGAAGccCCCATGCTGGTTATGGACCTCCTTCACAAAATGTTCAAgacttcaaacacacacagtcatttatGCTGTAAGAAGCTTTAAACCTTCCTCAAATCGAAAACCCCCATGCAGCATTTACAGACCCTGGAACTGGACACTGGTGCTTAACTCTGTTACTGTGGATGTGAACGGGacaaaaaaacagcctttttttctttcatgaacGACTGTTATGGGATATCTGTCCTCTAAAAGGACTTGGTGTATTAGTGCTGTGTGAAAATCACTGAAATGTATTAGACCACTGCCCTGCTGTGTTCTTTGTCCACTTCAGCCCTCTAGTGGATATAGTATGCACACAAACACGATCACAGCTGAAATGTGCGACACTTTGGAGTTTTTTTAAAGAGAGTGAGCCTCCCTAAAACATATTATAAAGCTCACGATAGTGCAGAATTTATGACTTGACGTTCCCTGTGCCTTGCTAAAGGAGCACCACTAGGATGCTAGATTCACTGGTTAGCAGTTTAACTTGCATGAAGAAACAACTTGGGCACTAGCCAAGAATTGAGCTTTCTAGAATGCATCCCATGAGTGAAACAATCTTTTATTGTATGTAATTAagactgtatttgtatttggaaCTGTGCCTTTTCATTTTAACTGTACAGTAACTGTTTTGGTTGAAATGCATGAATGATTTGCTGTATATTTTATCAgcattaaaagctttttttttaatgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439651 lncRNA downstream 648 5892326 ~ 5895688 (-) True G371121
XR_004577356.1 lncRNA downstream 4539 5886846 ~ 5891797 (-) True LOC117596178
TU439645 lncRNA downstream 10724 5880476 ~ 5885612 (-) True G371117
XR_004577342.1 lncRNA downstream 377956 5510716 ~ 5518380 (-) True LOC117596170
TU439411 lncRNA downstream 387967 5508102 ~ 5508369 (-) True G370942
TU439680 lncRNA upstream 84622 5993489 ~ 5994747 (-) True G371147
TU439686 lncRNA upstream 89136 5998003 ~ 5998159 (-) True G371152
TU439687 lncRNA upstream 89981 5998848 ~ 5999474 (-) True G371153
TU439665 lncRNA upstream 92312 6001179 ~ 6001613 (-) True G371135
TU439664 lncRNA upstream 92971 6001838 ~ 6004790 (-) True G371134
XM_026931827.2 mRNA downstream 300241 5589772 ~ 5596095 (-) False n6amt1
XM_034300092.1 mRNA downstream 300400 5589772 ~ 5595936 (-) True n6amt1
XM_034300024.1 mRNA downstream 339246 5549553 ~ 5557090 (-) True wu:fa56d06
XM_034300297.1 mRNA downstream 349304 5535285 ~ 5547032 (-) False LOC113537235
XM_026931629.2 mRNA downstream 349304 5535285 ~ 5547032 (-) False LOC113537235
XM_026931713.2 mRNA upstream 5092 5913959 ~ 5920199 (-) True mrpl39
XM_026932220.2 mRNA upstream 33172 5942039 ~ 5952313 (-) False LOC113537623
XM_034300324.1 mRNA upstream 33172 5942039 ~ 5952113 (-) True LOC113537623
XM_034300231.1 mRNA upstream 54885 5963752 ~ 5969065 (-) True mrpl16
XM_026932062.2 mRNA upstream 62173 5971040 ~ 5973439 (-) True txnl4b
XR_003403738.2 other downstream 349304 5534415 ~ 5547032 (-) False LOC113537235
XR_003403780.2 other upstream 33562 5942429 ~ 5952313 (-) False LOC113537623
XR_004577328.1 other upstream 110820 6019687 ~ 6033393 (-) False tpp2
XR_004577329.1 other upstream 449772 6358639 ~ 6363203 (-) False LOC113537742
XR_004577289.1 other upstream 1149968 7058835 ~ 7068467 (-) False LOC113537271
TU440391 other upstream 1149968 7058835 ~ 7068531 (-) True LOC113537271

Expression Profile