RNA id: XM_026931661.2


Basic Information

Item Value
RNA id XM_026931661.2
length 1786
RNA type mRNA
GC content 0.50
exon number 12
gene id eed
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 6668223 ~ 6675921 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGTTTCATGAACACATCCCTTTTAGCACGTCCCTTTTAAACGTTGCTCGTGCACAGAGCTCCATCTAGTGTACGAGGATTTCTAACCGCGTGAACCCTAAATCGCAGCTTTTTACAAGCTTAGTGCACTATCTTAGACGTAGAAATCATCATTTCATGCCCTATGCAGTGCTCTAGTATGCGGAGCGCGTAGAGGATTGGGAGTTAGCCGGAGAGTCGTTTTTGCGGCAGTGCGCGCCTGGTTTCCGGCAGTGAGGCCGCTGAGGATGAGGGGGAAGATGTCCGAGGCGGGAAACGACATCATGCCGGCAAAAAAGCAGAAACTGAGCAGCGATGAAAACAGCAACCCTGACCTTTCCGGGGATGAAAATGACGATGCTGTCAGCATTGAGAGCGGAACGAACGCCGAGCGGCCCGACACCCCTACAAACACGGCTAGTGCCCCGGGCAGGAAGAGCTGGGGCAAGGGCAAGTGGAAGTCAAAGAAATGCAAATACTCCTTCAAGTGTGTTAACAGCCTGAGGGAGGACCATGGCCAGCCTTTGTTTGGTGTCCAGTTCAATTGGCACAGTAAGGAGGGCGACCCGCTCGTCTTCGCAACAGTGGGAAGCAACAGAGTCACCTTATATGAATGTCATTCCCAAGGAGAGATCCGGCTCCTGCAGTCTTACGTAGATGCAGATGCAGATGAGAACTTCTACACCTGCGCTTGGACGTATGACACCAGCACCAGTCACCCTCTGTTAGCGGTGGCTGGCTCCCGCGGCATCATCCGCATCATCAACCACATTACTATGCAATGTGTCAAACATTATGTGGGACACGGAAACGCGATCAATGAGCTTAAGTTTCATCCAAGAGATCCCAACTTACTGCTGTCTGTGAGCAAAGACCACGCGTTACGCCtatggaacatccagacagatACGCTCGTAGCCATATTTGGAGGTGTGGAGGGCCATCGAGATGAGGTCTTGAGTGCGGATTTTGATCTACTCGGGGAGAAGATCATGTCCTGTGGAATGGACCACTCTCTGAAGCTGTGGAGAATAAACTCAGAGAGAATGCAAAAAGCAATACGAGGCTCTTATGAGTACAACCCCAGCAAGACCAACAGGCCTTTTGTGTCTCAGAAGATTCACTTCCCAGATTTCTCCACACGGGACATTCACAGAAACTATGTAGATTGTGTGCGCTGGCTTGGGGATTTAATTCTCTCAAAGTCCTGTGAAAATGCCATCGTGTGCTGGAAACCTGGGAAGATGGAGGATGACATTGACCACATCAAGCCCAGTGAGTCCAACGTGACCATTCTGGGCCGATTCGACTACAGCCAGTGTGACATCTGGTACATGCGCTTCTCGATGGACTTCTGGCAGAAGATGCTGGCTCTGGGAAATCAGGTCGGAAAACTGTACGTGTGGGACCTGGAGGTCGAAGATCCTCATAAAGCAAAGTGCACCACTCTCACGCTACCTAAATGCACCTCAGCCATCAGGCAGACCAGCTTCAGCAGAGACAGCAGTATTCTCATAGCAGTGTGTGACGATGCGTCTATCTGGCGCTGGGACAGGCTACGCTGATGACCTTTCATAGCCTGATGCTTTCTTTCCTCGGACCGCTAGAAATGAGCGCTCGTCACAGGACACGTTCCTCGATGAGCAACCTGGACTATGGATGCTTATTAGCTTAAGCTTTGGAAGTTGCTTACCTCAGAtgtgtctgcttttttgttcttcttttgttacCTTTTCTGTCTTTAATAAAAGCTATTTTTACTTGTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU440098 lncRNA downstream 101278 6563849 ~ 6566945 (-) True G371487
TU440057 lncRNA downstream 132219 6529397 ~ 6536004 (-) True G371454
TU439992 lncRNA downstream 305072 6362554 ~ 6363151 (-) False LOC113537742
TU439664 lncRNA downstream 663433 6001838 ~ 6004790 (-) True G371134
TU439665 lncRNA downstream 666610 6001179 ~ 6001613 (-) True G371135
TU440232 lncRNA upstream 132574 6808493 ~ 6815071 (-) True G371595
TU440272 lncRNA upstream 191825 6867744 ~ 6867960 (-) True G371632
TU440266 lncRNA upstream 194653 6870572 ~ 6874420 (-) True pspc1
TU440265 lncRNA upstream 203951 6879870 ~ 6881780 (-) True G371625
TU440274 lncRNA upstream 215847 6891766 ~ 6901343 (-) True G371634
XM_026932035.2 mRNA downstream 2150 6660785 ~ 6666073 (-) True hikeshi
XM_026931710.2 mRNA downstream 8136 6641064 ~ 6660087 (-) True LOC113537292
XM_026931834.2 mRNA downstream 57316 6606600 ~ 6610907 (-) False LOC113537384
XM_026931835.2 mRNA downstream 57316 6606600 ~ 6610907 (-) True LOC113537384
XM_034300340.1 mRNA downstream 167610 6469390 ~ 6500613 (-) False LOC113537739
XM_026932045.2 mRNA upstream 15745 6691664 ~ 6699031 (-) True nfkbiz
XM_026932032.2 mRNA upstream 27515 6703434 ~ 6714568 (-) True cep97
XM_026932210.2 mRNA upstream 45409 6721328 ~ 6733356 (-) True LOC113537618
XM_034299996.1 mRNA upstream 66668 6742587 ~ 6770718 (-) False LOC113537509
XM_034299995.1 mRNA upstream 66668 6742587 ~ 6770718 (-) True LOC113537509
XR_004577329.1 other downstream 305020 6358639 ~ 6363203 (-) False LOC113537742
XR_004577328.1 other downstream 634830 6019687 ~ 6033393 (-) False tpp2
XR_003403780.2 other downstream 715910 5942429 ~ 5952313 (-) False LOC113537623
XR_004577339.1 other downstream 1121191 5534472 ~ 5547032 (-) False LOC113537235
XR_004577289.1 other upstream 382916 7058835 ~ 7068467 (-) False LOC113537271
TU440391 other upstream 382916 7058835 ~ 7068531 (-) True LOC113537271
TU440780 other upstream 1042344 7718263 ~ 7724795 (-) True G372086
TU440974 other upstream 1236547 7912466 ~ 7916321 (-) False fam155a
TU441267 other upstream 1645065 8320984 ~ 8329026 (-) False timmdc1

Expression Profile