RNA id: XM_034300386.1


Basic Information

Item Value
RNA id XM_034300386.1
length 4122
RNA type mRNA
GC content 0.49
exon number 7
gene id si:ch211-214c7.4
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11001667 ~ 11019985 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAGGACACTGGGGTAGCTCCGGGAAATCGGGGGGTTTGTAGTCTGATCCTGGCTTCTGCGTGTGTTTAGGCTCGAAAACAACACGGGGCAGAAAATGTTTAGCCTTTAAATCCTTTGTTTGCATcagtgtggcctgtgtgtatatataggctaaatatatatatatcatcagaGCTAACAGCAACAGAGCGCGCGCTACACAAGGTAACAGACGCGTTAGAATTTTCGCGCTTTCCGCGTGCGCTCCTTTGACGTgtgaggaggagaaggaggccTACAGTGAgtcaaaaaaaaccctttaaacCTCACGTTTGTTCTTTAAACACGCCGGGTTGGGGCTGTGCACTGTGTTTCTCAGCCTAGCTGCGTGGGAACGAGTTCATCTGAAGttGGCCATCCAACAGCTGATCCTGGGTTAAGTGTGTACAGCACTGAATCCAGACTGACAACTGGAGCATACAAATAACTGCCAGGCAACGGCTGAGATGAAACCTGATGGGGTTGCTACAACTCCGGCTGAGCCAACAGATGATGTGGTGGAGCCTGTTCCTGAAGCAGCTGCCACTGAGGAGCAGGTCCAACAAGACTCGAGCCCATCATCTCCACAGCCTAATAAGCCTGAAAATGAAGGTGAGCAAGAAGGAGCAAATTCAACACTGCCTCCTCCTGCGAAAGAGGTCAATGGGAAATTCTCAAAACCTAAGGACAAAACTAAAGCCCCAATGAAGACCAAGCCAGCAAGCACTAAAGCAACAATCACAACAGGTGCTGCATCTCGCCCTACTACCACTCAAAGCCAAGTGGCCAATGGTGTTATGAAGACCGCTTCAAATGGTGCAAGCAAGAAACCTATGAGTATGACCTCAGAGATCAAGAAAAATGCCCCTGTTGGAGCATCCACTCAAGTCAAGAAAGTGCCCACTGCTCCAAGGATGCAGGTGAAGGCAGCTGAACAAAAAGCTGTTACGTCTGCCAGGCCAGTATCCTCCACAAGTAGTGGGACAAGAAAAACAGTAGCAGCATCCTCGTCAACACTGAGCAAAAAGCCAGTCACAGGAGGCAACAATGCTGTAGTCAAACCCAAGACCACAGCACCAAGGCCTGCTACTGCACCTGCTGCCAAAGCCAGTGTTTCAGCTGCCCCCAATGCTGCCCCTATTCCCAAGACAGCCAGGCCTACTGTAGCAACTGCTTCTCGTCCTACCACTTCCTCAGCGCCAGTTAGACTAACAACCACTGCTAGTAAATCTTCAGCCTTAAGAACAACTGTCTCTGCTCCCTCTGCTGCCCACTCTGCATCATCACAGCCTTCTAAGGTCTCCACTACCATAGCAGCTAAAAAAGATATAAAAACCACCACCAGTGCAGTGGCCAGAAAACCGTTAGCCTCTACCACCACACGCTCTACAGCTACAAAGGCCTCCAAACCTGAACCCCCCAAACCTGTTACAGCTGCCAAACGATTACCTACAGACACTAAAACATCTCAACCAAAAATGGATGAAACTAGGCAAGTACCAACACGGAAGGTCCCTCCAAGTCCCCGAAACACTTCCTCACGCACTGCTTCAGGCAAAATGGCTACAGAGTTTGGTAACCACAAGCAGGGAGTAAGTAGTAACCTAGTCTCTGTGAAGCGTCAAACAGCCAAACCAACGCAATCTGTTTTGCCATTAGTCATCAAAGGAAAGCCTTTAGAAGAACAGTCATCAGAGTCTGTGGAACCCTCTGCAATTTTGGAAACAACTGCCTCTGTAACAAGTGCAGCCATAGCACCTGTAGAATCTGTGGTAGAAGCACAAACTCCTTCAGTAGAGGTAGCACAGCCTGATCAACAGACCAGTGCATTTGTGGAAGGTCAGGGAGAAGGAGTGCAAATACCTGCCTCAGAGCCTACAAATGTGGACATTGTTTCCACCAAAGAGACAACAGATGCTGACCCATTAGCTATACAGTCAGTAGCTGAGGTGCCTGTACTTTTAATGTCTAATCCTCCACCTGTTGTACCAgaatctgaaaaaaatcatgactaCACTGCGACCATACCACCAATGGCACAAGAGATGACAGAGCAAGAATCTGTAACTGCTTCACCATGTGAGGTCCCCGCTAAGGACTTGGAGATTGTTGAGAAGCAAGAGCAAATAATTCGCAATCttgatgatgaagaggaagaggagagggaGGGCAGTCAGCAGGTGTCTCTGTCTGACATGAGTGGTACACAGCCTACTGAAGAGTCCAGGCCTGGTTCAGCTGGTCTGGCTGGTTCAGTATGGCGAGCAGGAGGCCTGCCCTCAGAATTTGACTCTGAGGATGTAAGCTGCAGCCAGCAGGGGGCCTCAGAGCTTAGTGCTCCTGGTGTTTTAGAGGGCACTGAAAGTATGGATGATCTAGGTGAGGCTAGCCTAAAAGGTGCTGATGGTGAAGGTGCATCAGCTGGCTCTCCAGACTTTGAGAAGTTCCCTGATATTCTGGTcaatgaagatgatgataatgatgacgacgatgatgatgatgatgacgaagATCGTGTTGATGATATGGAAGTAGGATCAGAAATGACAGAAGACCCACACAGGCAGTGCAATGATAATGAGGATGAAGACGATGATGTGGAGATGGCAAGTGAGGGTGTTACGGAGAGTGGCCTTGAAAGTTATGGAAATGCAGATGAAGATGACTTGGCAGAAGACTACAGATTGGACAACTTGAACCGTATGCAGCCTTCATCCATTGTTCCTACTGCCCTTTCTGCAGCAAATCCTTTTGCTGATGCCTGGATGCAGTCACTACAACCAGATCCTACCCTTGACTCCAGTCCTTCTTCCAACCCTTGGCAAACATACTCAGAATTGCCTAACCAACCTGCCGCTCAAGCCTGTCTGGATATTGGAAATGCCAAAACAGATCTATCCTCAACTCAGCCTCCAGCTCTTACGGATCCTGTTCCAAGCTCACCTCAGCCTTCTTCAGAGCCTGCTGCAGAGATGGATATGGGCATCAAACCAGGCTTGGCATCCCATTCCCAACGCATTTCTCAGTCTAGCACTTTGCTTGGCACAGAACTAGCCATCCATACTTGCAGTGATGCAAGCACACCTGAGGAGCTAAAAGACTACAGTATAAGCCCTGGACTAGAGAACCAAAAACAGCCCTTACCAGCTAGCCCAATTCCTGTTGCTTTGCCAGACATCATGCAGGATTTAGGTATCTGTAGATCTGATCGTGCAGGATCTGAACATGAAGAGGAAGAACCTGAGACTCTGCCTGCAGATGACATGTTGGCTGGTCTGTCAACGGTGACAACTTCTGCACCATCCTCCCATTCTTCTGCCACAGGGGATGAGGCTAGTGACACAGAAGGGGACATGCAGATCAGTGACCCTACTGAACCTGGTTCCACTGGAAACGAATGCTTTGATAGCACCCAAGTTGTCCACAGCATGTCAGCCTTGGTGGAGGAATGTGAGGAGGCCTGTGTTGAGATGGAGGGAGGTGGTGGTAGTGACACGCCGCAGTCTGCCACTTCAGCTGCCTCCTATGGTTTTGAGTGCACCACCTCTAATTCTAATGCCCAATCTACCACAGAGAGCTGTATCAAAAGCCCAGGCATTTTTTCTCTCGAAAATGAAGAGCAGCTTCCGGATGAGGCCAAAGACCCATCACTTATTAAGGAGCTGAACCTTTCACCTGCCTGTGCTCCTGCAGATGTTGACCTCCTTGACCAGCAAGGGGAGCTTCCGGTGAACTCAGAGCAGCAGTACATGCTTTGTGAGAAGGTCACTGAGGAGTTGCCAGAGCCTTGCTCACTAGGAGGCACTGTCCCCACTGAGACAGGCTTGGATAGCGCTTCCTCCTCGGAGCACCAACAAGACTTGGATCTTAACGCACCACATCCCTACTACTCCACAATATGCGAAAAGACTGATAGCTTCTTGACAGAAGGAAGGAGAAAGCACGAGATCTACGAGGCTTCTGGATCTCATTCTTTACCAAGGAAGTGACATCTGTGCTCAGCAGCAAGGAAAGATACCCACAGTCCACACAGCAAGGCCACCCAAGCATCATTCTGGACTACGTGTGGATCATGTGACACGTCTGCCTACTGATCTTCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU443008 lncRNA downstream 71139 10929739 ~ 10933407 (-) True G374039
TU443009 lncRNA downstream 74992 10928467 ~ 10929554 (-) True G374040
XR_004577288.1 lncRNA downstream 207349 10676632 ~ 10797197 (-) True LOC117596123
XR_004577287.1 lncRNA downstream 209989 10676632 ~ 10794557 (-) False LOC117596123
TU442685 lncRNA downstream 439622 10495636 ~ 10564924 (-) True G373762
TU443070 lncRNA upstream 47751 11067731 ~ 11067952 (-) True G374091
TU443072 lncRNA upstream 64662 11084642 ~ 11120831 (-) False G374093
TU443073 lncRNA upstream 95692 11115672 ~ 11120831 (-) True G374093
TU443088 lncRNA upstream 119203 11139183 ~ 11139811 (-) True G374105
TU443094 lncRNA upstream 127474 11147454 ~ 11147673 (-) True G374111
XM_034300186.1 mRNA downstream 8781 10951141 ~ 10995765 (-) False pkn1a
XM_034300185.1 mRNA downstream 8781 10951141 ~ 10995765 (-) False pkn1a
XM_034300187.1 mRNA downstream 27085 10951141 ~ 10977461 (-) False pkn1a
XM_034300184.1 mRNA downstream 30258 10951141 ~ 10974288 (-) False pkn1a
XM_034300182.1 mRNA downstream 30259 10949078 ~ 10974287 (-) True pkn1a
XM_026932266.2 mRNA upstream 5313 11025293 ~ 11046065 (-) True mcoln1a
XM_026931676.2 mRNA upstream 26779 11046759 ~ 11052112 (-) True trappc5
XM_034299986.1 mRNA upstream 227829 11247809 ~ 11258475 (-) True si:ch211-243a20.3
XM_026932104.2 mRNA upstream 255282 11275262 ~ 11280128 (-) False emp1
XM_026932103.2 mRNA upstream 255282 11275262 ~ 11279363 (-) False emp1
TU442843 other downstream 132000 10871284 ~ 10872546 (-) False lipt1
TU442201 other downstream 1085806 9878843 ~ 9918740 (-) True LOC117596103
XR_004577317.1 other downstream 2397706 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 2572122 8429611 ~ 8432424 (-) False LOC113537606
TU441267 other downstream 2675520 8320984 ~ 8329026 (-) False timmdc1
trnar-ucu_14 other upstream 452900 11472880 ~ 11472971 (-) True trnar-ucu_14
TU444510 other upstream 2289058 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 2304102 13324082 ~ 13324173 (-) True trnar-ucu_15
trnar-ucu_16 other upstream 2305537 13325517 ~ 13325608 (-) True trnar-ucu_16
trnar-ucu_17 other upstream 2306013 13325993 ~ 13326084 (-) True trnar-ucu_17

Expression Profile