RNA id: XM_034300202.1


Basic Information

Item Value
RNA id XM_034300202.1
length 1439
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC113537273
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 10355226 ~ 10359434 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCACAGGCTTAACTTAGCCTCCCACCGCTAAGTTTTGCATGGCAACAACACCTCATAGGGAACTGCTGAGAAAAAACCGTTAACGTTTGAGagctatatttgtatttaatgaaCTGCTCTAGAGGTCAGTTACGTCTTTGTGTCgtatttgagtgtgtgaagtATTTTAAAGCAATAGTTTTGCCGAACTTCACTCGATAATATTTTTGAAATCTGCACGGCAACAGTCGCCATGATGACGCTCGCGAGGCGCCCTAGTAACTGGCGCGCGCCGTTTCTGTCCAATAGAAGCGCGCTGCGCTTCACCCCGCGCGGACACCGAGCCTCAAACTGCAGCcagaggtttttcttttttctttcggGATTTCCCGTTTAACCTGAAACAATTGAAGCTACCGTTACATGCAAAGGGCCTTTCGGGCTACCCGTAAACAGATGGCAAGCAACAACTGCTATGCGAAGAGCGAAATCCTTGAGCTTCGCTTTGTCATTCAAGATGCTCAAAGTTTCTTTAGGGTGTTCAGTTCCAAGAGCACAACCCTTGATGCGCTGGCCTCAAGAATATCAGTGTTCATTGAACAACCCACAAATCTTGCTCAGAATTTGATGGAGCGTCTTCCAGTGCATCGACCCTCACACCATGACCTCATTTTTCAGTGCGGTGCTGACTGCTCTGATGGAAAACAGTTGTCTGCAAGatatGTCACTATTGAGCCAGATGAAAGAAAACTCCTCAATGCCACAAATGTTCTTGGCCTGATGGTGGACACGATTCTCAGGGAGGGCTTTCGCCTAATCAGCACCCGCACGGTTTCTCCAGAGGAGAAAATTGAGTGTTACACTTTTGAGAGAAGGGGGACTCGAAATATTCTTATCATCAGCAACCCCTATAAAGCAGATGTATCACCTGtatcaaaacaaacagaaaaaagtacaaaaaaggGCAAATCACAGAAGTGATCAAATCAACACTTGCCATGCATGTGGAAAAATCCCCAATGAagaaaaaccaaaaagaaaaaaaaaagccatcagCCAAAGTGAGAACCTGAGGCAATTTGAGGTTTCCCAGAAGATGGCGATGCTGTGTTATTTAGGGCATGATGcatttgtaaaaaatattagataacgttttattatttcataaaataatgcCATGTTTTAAACAATCAGCAGTAATGTAtagttaaaacatttttgatatGTCATTTGTTCAGACAGGctgatcattttcatttttgatttttactAGTTTTTCTATTATGTGCTATTTGCATGACCAAAGAGGCCTTTAATGTTAGACTCTTCATAATGTAGCCCACTGTTAATATGgattacagtatatacatgaTTTTAACAGCCTAGCTTTATAATATCTTTGTTGTAATATTGGATCTGCACAAAGTAAGACAAccagttataaacagtttaaGCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU442628 lncRNA downstream 62648 10290637 ~ 10292578 (-) True LOC113537663
XR_003403786.2 lncRNA downstream 62648 10290643 ~ 10292578 (-) False LOC113537663
TU442626 lncRNA downstream 65853 10288380 ~ 10289373 (-) True G373719
TU442619 lncRNA downstream 86565 10255003 ~ 10268661 (-) True G373714
TU442581 lncRNA downstream 108406 10191996 ~ 10246820 (-) False G373678
TU442650 lncRNA upstream 62729 10422163 ~ 10423467 (-) False cab39l
TU442685 lncRNA upstream 136202 10495636 ~ 10564924 (-) True G373762
XR_004577288.1 lncRNA upstream 317198 10676632 ~ 10797197 (-) True LOC117596123
XR_004577287.1 lncRNA upstream 317198 10676632 ~ 10794557 (-) False LOC117596123
TU443009 lncRNA upstream 569033 10928467 ~ 10929554 (-) True G374040
XM_034300007.1 mRNA downstream 119068 10217608 ~ 10236158 (-) False LOC113537761
XM_026932399.2 mRNA downstream 119068 10217608 ~ 10236158 (-) True LOC113537761
XM_026931752.2 mRNA downstream 213649 10133212 ~ 10141577 (-) True cryzl1
XM_026931753.2 mRNA downstream 231253 10120542 ~ 10123973 (-) True cbr1
XM_026932341.2 mRNA downstream 238254 10104532 ~ 10116972 (-) True morc3b
XM_026931660.2 mRNA upstream 38467 10397901 ~ 10399251 (-) True arl11
XM_026931674.2 mRNA upstream 62718 10422152 ~ 10435367 (-) True cab39l
XM_034300221.1 mRNA upstream 80514 10439948 ~ 10526876 (-) False mcf2la
XM_034300220.1 mRNA upstream 80514 10439948 ~ 10526374 (-) False mcf2la
XM_026931951.2 mRNA upstream 80514 10439948 ~ 10525124 (-) False mcf2la
TU442201 other downstream 436486 9878843 ~ 9918740 (-) True LOC117596103
XR_004577317.1 other downstream 1748386 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 1922802 8429611 ~ 8432424 (-) False LOC113537606
TU441267 other downstream 2026200 8320984 ~ 8329026 (-) False timmdc1
TU440974 other downstream 2438905 7912466 ~ 7916321 (-) False fam155a
TU442843 other upstream 511850 10871284 ~ 10872546 (-) False lipt1
trnar-ucu_14 other upstream 1113446 11472880 ~ 11472971 (-) True trnar-ucu_14
TU444510 other upstream 2949604 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 2964648 13324082 ~ 13324173 (-) True trnar-ucu_15
trnar-ucu_16 other upstream 2966083 13325517 ~ 13325608 (-) True trnar-ucu_16

Expression Profile