RNA id: XM_034299962.1


Basic Information

Item Value
RNA id XM_034299962.1
length 2221
RNA type mRNA
GC content 0.54
exon number 12
gene id atg4da
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 14569640 ~ 14579218 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGCGCCGGTTTGACAACAGGAAGTAAATGGCGTTGTGGTGTAGGGCGAGAGCGGCGGCTGCGGAGGCTCGGGCTCGGTGTGTGGAGTCAGTGCGAgcagaggcagaggcagaggcagagtGGATCAGAAAACAGAGAGTATTCTGCTTTTAATTAGTTCTGGCTGAATGGAGGTATTATAGTAGCTGGTTATCTAGTTATCTAGTtatctagctagttagctatagCCCTTGCCTTGACATCTAATACTGCTGTTCAGAGGCAGCGCCGACATTAATAACAACTGagcacaaaaatattacataacacACTGACATGAGGCATTTAATACTGAGGAATCTGGTTATGCGAGGAATAAAACCATAttgggagtgtgctgttataggaaattaatcacaAACAGAGGCACTTGCGCTGGTGATGATGTCACTCCGCGGAGGTCAGCGCGAGGCCTGAGTCATGAACTCGGTCACCCCCAGCGCCGCCCAGTACGCGAGGGGCGGAGCTCTTCACAACGACCTTGTGGATGGGAGGAAATTGCCGCGGCCTTCCTCGCCGCAGGTCCTGGAGACGAAGGGGCATTTCGGGAACGGGTTACTCGCCGACGGGGCGGGAGAGCCGGATGAGGTGGacaagctgaagctgaagctgatgACGGCGTGGAACAACGTCAAATACGGATGGTCAGTCAAAAGCAAAACCGTCTTCAACAAAACGTCCCCGCTGATCCTGATGGGACAGTCCTACTTACTCAACACTGAGGAGGAAGTGGAGCGTTTCCGGCTGGCGTTCGGCTCGCGAGTGTGGCTCACCTACAGGAAGGAGTTTCCTCAGCTGGAGGGGTCGAACCTGACGTCGGACTGCGGCTGGGGCTGCATGCTGCGTAGCGGACAGATGCTCCTCGCCCAGGGGCTCATGCTCCATCTTCTGCCTCGACACTGGAGATGGCCTGACTGTCCTCAGCTGGCTGATGTGGATTTCGAGGTGTTGAGACCCCGCTCACCGTCTCGTCCGGCCGGTATCTCCATCCCCTCCTTCAGCTCTACATGGAGCACATCGGGACCTGAGAAACGCCCGTCCTCCATGAACGAGATTCCAAAACAAGCTGAGTCGAGACGGGACGTGCAGACCGAGAGCCTCCACCGCAGGCTGGTGTCATGGTTCGGGGACGAGCCGGCTGCGCCCTTCGGGGTTCACCGGCTGGTCGAGCTGGGCAAGGAGTCGGGGAAGAAGGCGGGAGACTGGTACGGGCCTTCACTCGTCGCACACTTACTGCGaaaaGCTGTGGCCAAAAGCACAGAGTTGGACGATCTGGTCGTGTACGTGGCTCAGGACTGCACAGTGTATAAAGGGGACGTGATGTGGCTGTGTGAACAGAGCTCCTCTGACTCCGGTAGCTCCGGCTGGAAGTCTGTCATCATCCTGGTCCCGGTGCGACTGGGAGGAGATTCACTCAACCCGTCCTACATCGAATGCGTCAAGaATCTTCTGAAGTTGGACTGCTGTATCGGGATCATCGGCGGGAAACCCAAACACTCGCTCTTTTTCATTGGCTTTCATGATGAGCAGCTATTGTATTTAGACCCACACTACTGTCAGCTGGTGGTCGACGTCACACAAGGAAACTTCCCGCTGGAGtCCTTTCACTGTAACTCTCCCAGGAAGATGAACTTTAATCGCATGGATCCCAGCTGCACTTTGGGCTTCTACGCTCACAGTAAAAAAGATTTTGAGTCTCTGTGCTCAGCCGTTAGCGGGGCTTTGTCCGTGTCTAAAGAGCGCTACCCGATCTTCACGTTTGTAGAGGGCAGGGGGCAGGACTACAGCCTGGAGGGGTACAGCGGAGGCAGCACACACCCCAGCGCCCACATCCTCCCCCCTGACACGATGAACAGAAACAGCGCTGAGGGCTTTGTGTTTCTGTGAGGACTCACTCATGTGGAGCACAAACCAGCTTCGAAActgaagctgaagatgaagctGAAGCTGGGGCACGATGGAGCGACTCCATACAATGCACTGCAGtcgtagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaggtcataGAAAATTGAATAAATAGGTGTGTtgaggatttttattttaagcacaACCATTCACTACAATttaactttctctctttctttctgtcagtctcttgtggtgtctctctctttctttctctctctcattctctctctcttattctctctct

Function

GO: NA

KEGG:

id description
K08342 ATG4; cysteine protease ATG4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU445374 lncRNA downstream 36956 14532367 ~ 14532684 (-) True G376093
TU445344 lncRNA downstream 45137 14460283 ~ 14524503 (-) False meis1a
TU445336 lncRNA downstream 103132 14462142 ~ 14466508 (-) True G376055
TU445324 lncRNA downstream 114171 14383208 ~ 14455469 (-) True G376048
TU445412 lncRNA upstream 78728 14657946 ~ 14661311 (-) True G376127
TU445429 lncRNA upstream 103169 14682387 ~ 14684328 (-) True G376143
TU445465 lncRNA upstream 160151 14739369 ~ 14739807 (-) True G376171
TU445467 lncRNA upstream 160262 14739480 ~ 14739807 (-) False G376171
TU445468 lncRNA upstream 161043 14740261 ~ 14741549 (-) False b3gnt2a
XM_026931754.2 mRNA downstream 2554 14554491 ~ 14567086 (-) True actr2a
XM_026932003.2 mRNA downstream 45124 14488794 ~ 14524516 (-) False meis1a
XM_026932002.2 mRNA downstream 45124 14488794 ~ 14524516 (-) True meis1a
XM_026931768.2 mRNA downstream 86776 14476538 ~ 14482864 (-) True etaa1
XM_026931764.2 mRNA upstream 6976 14586194 ~ 14641454 (-) True mast1a
XM_026932028.2 mRNA upstream 118056 14697274 ~ 14712646 (-) True ifngr1
XM_034300025.1 mRNA upstream 153357 14732575 ~ 14737860 (-) True zgc:66455
XM_026932118.2 mRNA upstream 153357 14732575 ~ 14737859 (-) False zgc:66455
XM_026931643.2 mRNA upstream 160914 14740132 ~ 14749734 (-) True b3gnt2a
XR_004577346.1 other downstream 294510 14274817 ~ 14275130 (-) False dand5
XR_003403798.1 other downstream 530654 14038854 ~ 14038986 (-) True LOC113537776
XR_003403796.1 other downstream 531042 14038528 ~ 14038598 (-) True LOC113537774
XR_003403797.2 other downstream 531778 14037731 ~ 14037862 (-) True LOC113537775
TU445045 other downstream 538761 14027294 ~ 14030879 (-) True G375826
TU445430 other upstream 103884 14683102 ~ 14684328 (-) False G376143
TU445400 other upstream 118021 14697239 ~ 14712377 (-) False ifngr1
TU446065 other upstream 876561 15455779 ~ 15457027 (-) False dpy30
TU446066 other upstream 876561 15455779 ~ 15458205 (-) False dpy30
TU446067 other upstream 876561 15455779 ~ 15457083 (-) False dpy30

Expression Profile