RNA id: XM_026931713.2


Basic Information

Item Value
RNA id XM_026931713.2
length 1233
RNA type mRNA
GC content 0.52
exon number 10
gene id mrpl39
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5913959 ~ 5920199 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTATGACGGTGGACACGCAGCGGATGTCAAAGCATGGCGCGTTCTATGCGCAGTAATTGACTGGTTATTAAGTTTACAGCGTCTTGTATATGTGTTGTTTTACGTGAATTAAATCAGTGTTCGCTTGAAAGAGGATTTGACATGGCGTGTGGGAGAGTTTGTCAAACGGTGCAGCGCCGATTGGTGTCCAGTGCGGCAGCTGAGCGGCTTTCTGCATCTGAGTTGCGCAGTTGGCGTAGTACCCTGTTCTCTAAAGAGCAAGCTCGCCAGCGCTCACTGTATCCCCGTGTTGAGAAAATCGAGGTGACTATGGATGCCCCCGGGCTACAGGGAACACTTCTGGTGATGAACAAGGGCATGTCCACGCCATATAGCTGCGCAAGACATTTGACAGAGTGGCATGTAACGAGTGCAGCTCTCGCCCTGGTGGACGGAGAGCCATGGCACATGCATCGTCCGCTCACTCGCTCCTGCTCGCTCACACTGCTCACATTCAAAGACGCCAATCCTCAGCTCGTTAACCAGGCGTATTGGCGCTCCTGTGCAGCCTTGTTGGGCCAAGTGCTTGATGACGCCTTTAAGGAAGAGTACACTGTGGAGCTGCTGAAGATTCCTGAAGTTCCTGTGACCGCTGGTGCTTTCTGCTGTGACGTGGTGCTGGATCCTCGGTTAGATTCCTGGACTCCATCAGAGGAAAACCTACGCTCATTAACTCGTGAAGCTCAGCAGCTCATGCTTAAAGATTTACCCTGGGAGCCTCTGGAGGTGACGCCCCCTGTAGCATTGGAGATCTTCTCTCATAGCAGATATAAACAAGAGGAGGTGGAAGAAATGGCTGCTAATTGCCCCAGTGGCACAGTGTCATTATACAGGTGTGGGGAGCATGTGACTCTGTCTGAGGGCCCCCTGGTGGCCAGAACAGGTCTGTGCTGTCAGTATGAAGTAACAGCACTGCATACACTGGGAGGAGGACAGTGGGGTTTACGACGCCGAGCCCAGGGCCTCTCACTTCCCCTGAACCTCACGaTTCACCACACAATGTGGAGGAAGCTGAGGAAGAGAGCTGAGAAATTGGTGGAGATTCCCTCATCTGCAGCCACAAAATCTGTGACCACACCCCCTTCTCCCAAAACCACTCCCTCATCTTCCCAACACTGACCTGCAACTAATCATATGCATATAAAATACTGTTTCATCTCTGTGTAATATTGTTGAATAAATCGCACACCAGTG

Function

GO:

id name namespace
GO:0007520 myoblast fusion biological_process
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K17420 MRPL39; large subunit ribosomal protein L39

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439651 lncRNA downstream 18271 5892326 ~ 5895688 (-) True G371121
XR_004577356.1 lncRNA downstream 22162 5886846 ~ 5891797 (-) True LOC117596178
TU439645 lncRNA downstream 28347 5880476 ~ 5885612 (-) True G371117
XR_004577342.1 lncRNA downstream 395579 5510716 ~ 5518380 (-) True LOC117596170
TU439411 lncRNA downstream 405590 5508102 ~ 5508369 (-) True G370942
TU439680 lncRNA upstream 73290 5993489 ~ 5994747 (-) True G371147
TU439686 lncRNA upstream 77804 5998003 ~ 5998159 (-) True G371152
TU439687 lncRNA upstream 78649 5998848 ~ 5999474 (-) True G371153
TU439665 lncRNA upstream 80980 6001179 ~ 6001613 (-) True G371135
TU439664 lncRNA upstream 81639 6001838 ~ 6004790 (-) True G371134
XM_026931654.2 mRNA downstream 5092 5896336 ~ 5908867 (-) False jam2a
XM_026931653.2 mRNA downstream 5092 5896336 ~ 5908867 (-) True jam2a
XM_026931827.2 mRNA downstream 317864 5589772 ~ 5596095 (-) False n6amt1
XM_034300092.1 mRNA downstream 318023 5589772 ~ 5595936 (-) True n6amt1
XM_034300024.1 mRNA downstream 356869 5549553 ~ 5557090 (-) True wu:fa56d06
XM_026932220.2 mRNA upstream 21840 5942039 ~ 5952313 (-) False LOC113537623
XM_034300324.1 mRNA upstream 21840 5942039 ~ 5952113 (-) True LOC113537623
XM_034300231.1 mRNA upstream 43553 5963752 ~ 5969065 (-) True mrpl16
XM_026932062.2 mRNA upstream 50841 5971040 ~ 5973439 (-) True txnl4b
XM_026931773.2 mRNA upstream 56178 5976377 ~ 5983797 (-) True blzf1
XR_003403738.2 other downstream 366927 5534415 ~ 5547032 (-) False LOC113537235
XR_003403780.2 other upstream 22230 5942429 ~ 5952313 (-) False LOC113537623
XR_004577328.1 other upstream 99488 6019687 ~ 6033393 (-) False tpp2
XR_004577329.1 other upstream 438440 6358639 ~ 6363203 (-) False LOC113537742
XR_004577289.1 other upstream 1138636 7058835 ~ 7068467 (-) False LOC113537271
TU440391 other upstream 1138636 7058835 ~ 7068531 (-) True LOC113537271

Expression Profile