RNA id: XM_026931714.2


Basic Information

Item Value
RNA id XM_026931714.2
length 2118
RNA type mRNA
GC content 0.42
exon number 10
gene id stn1
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 9919822 ~ 9927977 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATATCCGCTCGGGGCGCTAGGGGGCAGTGTGTGCACTCGGTGTGTATATGACCGTTTGTGAATCTGCGAAGAATAAGAACATCTTGTCCTGTTTCCTGTTACTGACGCTTTAGCGGCAGCTAGaGCTTTTTTTCATGTACAATGGACGGTGATCAGGGTGGTGCTGAAGATGAACCTCCATCACTGCTGTGGGGACTGGACCCTGTGTTTTCTGCCTACGCCAGGCTTTATGTTAAAGACATCCTACAAATGAGAGAATCTCGACAAGTTCCAGGAATTTACTTCTATAAAAGTCACCCGCTGTTCCAGGTGGATGTACTGGGCACTGTGGTGTACAGACGGGAGAGAGATGACTTTTACTGCTATGGAGTGGATGACAGTACCGGAGTCATCAACTGCCTGTGCTGGAAAGATGAGAAATGGCGAGATCATGGAGACTTGGCAAAGGATGCAGCTAGAGGTCCTGCTGGAGGTGGCTTTAATGTAGAGGAGCAGTTGAGGAAGCTCCGGGAGGCACAGAGGAGCAGCTCAGTGCTGGAGATTGGAGATCTGCTCCAAGTACGCGGTTCCCTTAAAACCTCACGTGAACAGAGAGAGATCATGGCCTCCTCATTTTataaAGTGAATGATCCTGTGATGAGTGTGCAGATCTCCCGCATGTTGGAGATGCCTCAGCTCTACAGAGACTGCTATGACAAACCATTCTTTATCCCATCCAGTGAGCTTAGTGCAAGCTCCACTGAtaatGGAAGACCCTCAAGTTTCCAGTCTGTACTGAGTCAGTCAGTTCACATCTTGAAGGAGTTCCTAAAAGAGAAGGAGGTGACCAGGTTTCGACCTTATGATGTCGAGTATCTTTTACACCCATTGATCCAACAGCCTGGTTCAAACACGTCAGCGGAACAGgAGCCTGGTTCTGTTCGGTCGATGATCCCTGCACAGATCAGGAACCTCCTCAAAGAGACCCTGAAAATTCTGCAAGTGGAGGGAGAGATATTCCGCAAAGTCCTGTCTCAGGATGAGGTGTACAATGTAACTGAACATGACAAAGATCTGCTTGCGGCGATTTGTGACATCTTGAGAGAGGATtgcaaaagagagaaatATGCTGAAAAGGGTTGCCATGTGCTGCACATCTTGTCCAGCGTGAGGCAGCGTTACAGCCGTAATCTGAGCAGAGAAGCACTGGATGTGGCGCTGAAGTTCTTAGAGTGtaacagtgacatcatcagtacAACAGATGCCCATTACACTGTTTTATAATCATGGGGTTTAAAATGTTCTGGGAAACTTACACACCCCAAATCTTTATTATGTCTAAGCAAAGAACATTCAAGGCTAGAGTTTCTTAAAGTGCCTGACTGAGTCCTCATGGGGCTGTGCAGAAATTGCTGTCAATATGCCTTTGCCAAATATCTCAAAACTATTTTTGATATGCTGTTGACAAATTTCATAATTATCATTTGCTTGCAAATTGATTTTGGTATTAATCTGTCCAAAATAGGCCTGTTTTACAGACAACTTTTACAGATAGCAATCAATTTACATGCTGTTTTAGCTCAGTGATTTTCTAAACTGGGGTATGAAAGATGTTATACGATCATGCTCGATTTCTGCTTTTTAATACAACGTTAATTCAATGATCGCACAAGCCCCAGAGTCATACATCTATATTGCTCTATATTGCTCTATAGATGTATGACTCTGGGGCTTGTATGATCATGGGGCTTTGCTTAGGGTTCcacttaattaattttattattaataaggtTAAATAAATTGACAGACCTACTGCTTGAAGCAACTTTTCAGGGTATCAGCGTTCTCTATATGGCAGACTTgcctagcattataataaagaAAGGATATATTTTTCGAATTGAAAAagatatttggggaaaaaaagaaaccaacaAAAAACCACCAAAGTTGTTttgcattatattatttaaaaaatttagcCATCTAGATCTGACATGTGCTTTTAAAAAGGTAACACAGAGATGAAATTAGTCATGTGATCATAgttcaatactttttttttttccttttttacactttaaagaATTGCCTTTTTTTCTTACACTTTAAAGAATTAAAGGAATAGCATTTTCCAAG

Function

GO:

id name namespace
GO:0010833 telomere maintenance via telomere lengthening biological_process
GO:0043047 single-stranded telomeric DNA binding molecular_function

KEGG:

id description
K23312 STN1; CST complex subunit STN1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU442160 lncRNA downstream 87497 9831607 ~ 9832325 (-) True G373327
TU442150 lncRNA downstream 94129 9825461 ~ 9825693 (-) True G373317
TU442133 lncRNA downstream 119912 9793369 ~ 9799910 (-) True G373303
TU442132 lncRNA downstream 119912 9793426 ~ 9799910 (-) False G373303
TU442149 lncRNA downstream 127201 9792282 ~ 9792621 (-) True G373316
TU442236 lncRNA upstream 34445 9962422 ~ 9964543 (-) True G373398
TU442515 lncRNA upstream 94560 10022537 ~ 10024885 (-) True G373629
TU442537 lncRNA upstream 156462 10084439 ~ 10084737 (-) True G373649
TU442549 lncRNA upstream 198848 10126825 ~ 10127603 (-) True G373656
TU442548 lncRNA upstream 199206 10127183 ~ 10127603 (-) False G373656
XM_034299863.1 mRNA downstream 1043 9878913 ~ 9918779 (-) False LOC117596103
XM_034299861.1 mRNA downstream 96114 9807172 ~ 9823708 (-) True sh3pxd2aa
XM_026932141.2 mRNA downstream 213996 9597014 ~ 9705826 (-) True cfap58
XM_026932385.2 mRNA downstream 372565 9306733 ~ 9547257 (-) True sorcs3
XM_026932386.2 mRNA downstream 531086 9306733 ~ 9388736 (-) False sorcs3
XM_026931646.2 mRNA upstream 3472 9931449 ~ 9937173 (-) True lrrc58a
XM_026932071.2 mRNA upstream 11319 9939296 ~ 9961370 (-) False fstl1a
XM_026932070.2 mRNA upstream 11319 9939296 ~ 9961370 (-) True fstl1a
XM_026932036.2 mRNA upstream 40474 9968451 ~ 9970159 (-) True gja8b
XM_034300288.1 mRNA upstream 65724 9993701 ~ 10043255 (-) False bcl9
TU442201 other downstream 1082 9878843 ~ 9918740 (-) True LOC117596103
XR_004577317.1 other downstream 1312982 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 1487398 8429611 ~ 8432424 (-) False LOC113537606
TU441267 other downstream 1590796 8320984 ~ 8329026 (-) False timmdc1
TU440974 other downstream 2003501 7912466 ~ 7916321 (-) False fam155a
TU442843 other upstream 943307 10871284 ~ 10872546 (-) False lipt1
trnar-ucu_14 other upstream 1544903 11472880 ~ 11472971 (-) True trnar-ucu_14
TU444510 other upstream 3381061 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 3396105 13324082 ~ 13324173 (-) True trnar-ucu_15
trnar-ucu_16 other upstream 3397540 13325517 ~ 13325608 (-) True trnar-ucu_16

Expression Profile