RNA id: XM_026931724.2


Basic Information

Item Value
RNA id XM_026931724.2
length 1869
RNA type mRNA
GC content 0.48
exon number 6
gene id ankrd10a
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 8091366 ~ 8105352 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAGTTTCAGAGTGTGCGCGGTTGTCTTTTGTTGTCTGAGCAGGAGCCTCTCCGACCTGTACGGCGTGCTCGGGGAAAATAcaaagaaatcattttatttccCCTCCTCCGCCACTAGAAGAGCATTATTAGGTGCGGAAGCATGTCGGTGGGCATCGAGTTGGGCTTTTCTAACGACGAGGTGCTGAGCGCGCGCTTCCCGCTGCACCGCGCCTGCAGGGACGGAGACGTGCGCGCGCTCTGCTCCCTGCTGCAGCGCCCCGGCGACCGAGCACAGCTCCAGGCGGAGGACTCCTTCTACGGCTGGACTCCCATTCACTGGGCGGCCCACTTCGGAAAGctggagtgtgtgttgaggttgGTACAGGTGGGATGTGAGGTGAACGCTGTGACAACTCGCTTTTCACAAACTCCGGCACACATCGCTGCATTCGGAGGACACCCAGAGTGCCTTGTATGGCTCCTGCAGGCTGGTGCTGATATCAACAGACAGGATTATATGGGTGAAGCCCCCATCCATAAAGCTGCAAGGGCAGGTAGCATGGATTGTATCAATGCCCTGTTGTTCTCAGGTGCAAAACCAGAATTAAGGAACACAAACGGATTGACTGCGGCCGACCTGGCCCGTGCACAAGGCTTCCAGGACTGTGCTCAGCTCCTCTCCAATGCAGAGAATCAACTCAAGCACATAAATGGGTTTGGCCGTAATGGAACTGACCTCACCCACATCCAAGGGCGGAGTCTTCTTAATGGGATAACCAATAGGAAGAGGCTTCATGATTGCTCAGAGCCAAATCATGTCAAGAAAGCAAGAGTTGACTGCATGGATTTTCCTCTGAAGACTGTCAGTGTGATGGAGGCGGATATTGAAAGTATGCATGTAGAATCTGCCCCAGACAACCAATCAGATGGCACCATAGAAATAGCCACAGGCTTAAGCAATGGCCACGCACAACAGAAGAGTTTTGACACAAATGGCCATTGCCACCCACACCAGCCAGACGCGCCCGAGCTGGGCAGCAGCATGTGCGGCTCACTGCACCTCGGCGGCAGCCCCAGCAGCTACATGTCTCACAGGCCCTTGTGGGCCACGTTCTCATCAGACTTCAGTGATCATCTGCACTACGGCCACTACCACGGTTTTGGAGACACGGCTGAAGACCTGGAGGAGGCTGGAAGCCGCCACGAGCACATTACAACTGTGAAGCTTGAGCAACACTACAACCAAGAGGTGTTAAATGCCATGCAACTGTTTCATGGATCATGAAGGGTTAGAGCCCATTTGTTTGTATAAAAGTGGGCGTAAAGAGCCACCCACCCGCCTTAAACCTTAACCAGTTTACCCTGACTTTGCCCTTGCACCTTAAAAAAGGCCACAGTAAaagagtattattttttttgtggggAAAAGCCTTTGTACCAAAGGGGTATTCGTGGTTTTTTCATCTGACTTTTTGTGATCTCTTTATTTTATGGTATGTTTCAATAATGGATAAATTGATAATGATTAAGTAGAGCAACAGTGGATGATTTGTTGTTAACTGTGGTGCATTCAGCGttcctattttttttcccccactttctCACCACAGGAGTTTAAGGACTTATTTGAATAGCCTTGTAGGATTTCATGATTTTTCCGTTTGTATGTTTGTAGGGGTTTGTGCCAATATTTTTCCCCTTAAGTAGTTTGGCACTagcattataaaatgtattgtttcCTGTTTCTAGTTTTGCTGAGAAGTTGAGTTGAATGGATTATGTAAAATCCAATGAATTTCACTGTAAAAGTATTTGTTTTGAGAAAATGGACATTTTACATTCCTTCTATCTTTTGTGTTGTGATATATAAAAGTATTTGAGACAGAA

Function

GO:

id name namespace
GO:0060828 regulation of canonical Wnt signaling pathway biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU441040 lncRNA downstream 6827 8082963 ~ 8084539 (-) False cars2
TU441021 lncRNA downstream 74978 8016105 ~ 8016388 (-) True G372307
TU441014 lncRNA downstream 102168 7988950 ~ 7989198 (-) True G372300
TU441002 lncRNA downstream 114375 7976777 ~ 7976991 (-) True G372288
TU440867 lncRNA downstream 181814 7909124 ~ 7909552 (-) True G372168
TU441219 lncRNA upstream 97416 8202768 ~ 8204224 (-) True G372471
TU441222 lncRNA upstream 156083 8261435 ~ 8267189 (-) True LOC113537489
TU441285 lncRNA upstream 323252 8428604 ~ 8444065 (-) True G372522
TU441552 lncRNA upstream 669680 8775032 ~ 8788141 (-) True G372742
XR_003403741.2 lncRNA upstream 858233 8963585 ~ 8965621 (-) False LOC113537261
XM_026931725.2 mRNA downstream 1269 8087780 ~ 8090097 (-) True LOC113537306
XM_026931658.2 mRNA downstream 6881 8069402 ~ 8084485 (-) True cars2
XM_026931731.2 mRNA downstream 24915 8062221 ~ 8066451 (-) True LOC113537312
XM_026931738.2 mRNA downstream 36821 8042485 ~ 8054545 (-) True irs2a
XM_026932396.2 mRNA downstream 81133 8006372 ~ 8010233 (-) True lig4
XM_026932151.2 mRNA upstream 22209 8127561 ~ 8131183 (-) True cryaa
XM_026932402.2 mRNA upstream 27635 8132987 ~ 8148533 (-) True cbsa
XM_026932222.2 mRNA upstream 44788 8150140 ~ 8157560 (-) True u2af1
XM_026931962.2 mRNA upstream 107551 8212903 ~ 8218195 (-) True rab9a
XM_026931961.2 mRNA upstream 113287 8218639 ~ 8222543 (-) True LOC113537479
TU440974 other downstream 175045 7912466 ~ 7916321 (-) False fam155a
TU440780 other downstream 366571 7718263 ~ 7724795 (-) True G372086
TU440391 other downstream 1022835 7058835 ~ 7068531 (-) True LOC113537271
XR_004577289.1 other downstream 1022899 7058835 ~ 7068467 (-) False LOC113537271
XR_004577329.1 other downstream 1728163 6358639 ~ 6363203 (-) False LOC113537742
TU441267 other upstream 215632 8320984 ~ 8329026 (-) False timmdc1
TU441284 other upstream 324259 8429611 ~ 8432424 (-) False LOC113537606
XR_004577317.1 other upstream 486055 8591407 ~ 8606840 (-) True tsga10
TU442201 other upstream 1773491 9878843 ~ 9918740 (-) True LOC117596103
TU442843 other upstream 2765932 10871284 ~ 10872546 (-) False lipt1

Expression Profile