RNA id: XM_026931753.2


Basic Information

Item Value
RNA id XM_026931753.2
length 1435
RNA type mRNA
GC content 0.50
exon number 4
gene id cbr1
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 10120542 ~ 10123973 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGACTTCCTGTATGACGCAGTGAGCGCTGACGCGGTGCGGGATTCGTGTTCTTCCGGTTCTGCGCGGTGAGCTGCCTGTTGCGAGTGTGTCAGCTTTACGTTAATACGCGTCCTGAAGGCACGATGTCAGCGCGGAAAGTTGCGCTCGTGACAGGCTCGAACAAGGGCATCGGGCTGGCGGTGGTGCGCGCGCTGTGTAAGCAGTACGACGGAGACGTGTACCTGACGGCGCGGGACGTGGCGCGCGGGACGGCGGCCGTGGAGGGTCTGAAGGCAGAAGGACTGGCGCCGCTTTTCCGCCAGCTGGACATCACGGACCTGGGCAGCGTGCGCGCGGCGCGTGACTTCTTCAAAGCGGAGTACGGCGGCGTGGACGTGCTGATCAACAACGCGGGGATCGCCttcaaaaTGGCTGATAAAACACCGTTTGGAATCCAGGCTGAAGTGACACTCAAGACTAATTTCTTTGCCACCAGAGATTTGTGCAATGAGTTCCTCCCTATCATCAAGCCAGGAGGAAGGGTGGTGAATGTTTCCAGCATAATGGGTTCCATCGCTCTGAGCCGCTGCAGCCCGGACCTCCAGGCTCGTTTCCGCAGCAATGACATCACCGAGGAGGAGCTGGTGGGGCTAATGGAGAGCTTCGTGAAGGATGCTCAGGAGGGTACTCACACACAAAGAGGCTGGCCTGAGACCGCGTATGGCATTTCCAAGACCGGCCTGACCACTCTGACCAGGATCCACGCCTGGAGACTGACGCAGGAGAGGGCTGGAGACGAGATCCTGTGCAATGCCTGCTGTCCAGGCTGGGTCAGGACCGACATGGCAGGGCCAAATGCCACAAAGTCTCCAGACGAGGGCGCCATCACTCCAGTCTATCTGGCTCTGCTGCCACCTGGGTCCAAAGAACCCCATGGACAGTTAGTGTCAGAAAAGAAGGTGCAGCCAtggtgagcatgtgtgtgtttgcttgataatattgttattataatattgGTTATAAAAGTGTGCAATaatatgcattatatattttGCTATGTCTCTAGTATATCTATATTGCAGCTTGAAAGTGCTTTAGCTGCTGACTATAAATGACACCATATGAGAGGTAGTTTCCTCATTCTCCTGCATTACTGATACTTTATCATTAGAACACTCTTTGGTATCTGTGCTGAATAAAATCAGATAATAAAATCTGTGTCAGTCTGAATAGTTCACACAACCAGACCAGTCAGATAAGATGATTGATGTGATTTATTGATTCAAAGACAAATTAACATACAACAATGTCATGATCATTACATTTGTGCCTTATTCTGCTTATAGTTAATATGTTTAGAATTAaaccatttatcatttatcaccATCACTAATGTTAAGGATTTATATTTATGGGCTGTGGACTGTAAGctaaaataaagattttcacATTCA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K00079 CBR1; carbonyl reductase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU442537 lncRNA downstream 35805 10084439 ~ 10084737 (-) True G373649
TU442515 lncRNA downstream 95657 10022537 ~ 10024885 (-) True G373629
TU442236 lncRNA downstream 155999 9962422 ~ 9964543 (-) True G373398
TU442160 lncRNA downstream 288217 9831607 ~ 9832325 (-) True G373327
TU442150 lncRNA downstream 294849 9825461 ~ 9825693 (-) True G373317
TU442549 lncRNA upstream 2852 10126825 ~ 10127603 (-) True G373656
TU442548 lncRNA upstream 3210 10127183 ~ 10127603 (-) False G373656
TU442550 lncRNA upstream 3210 10127183 ~ 10127889 (-) False G373656
TU442553 lncRNA upstream 4836 10128809 ~ 10129630 (-) True G373657
TU442551 lncRNA upstream 4959 10128932 ~ 10129414 (-) False G373657
XM_026932341.2 mRNA downstream 3570 10104532 ~ 10116972 (-) True morc3b
XM_026932342.2 mRNA downstream 3609 10104532 ~ 10116933 (-) False morc3b
XM_034300288.1 mRNA downstream 77287 9993701 ~ 10043255 (-) False bcl9
XM_034300286.1 mRNA downstream 77287 9993701 ~ 10043255 (-) False bcl9
XM_026931972.2 mRNA downstream 113699 9993701 ~ 10006843 (-) True bcl9
XM_026931752.2 mRNA upstream 9239 10133212 ~ 10141577 (-) True cryzl1
XM_034300007.1 mRNA upstream 93635 10217608 ~ 10236158 (-) False LOC113537761
XM_026932399.2 mRNA upstream 93635 10217608 ~ 10236158 (-) True LOC113537761
XM_034300202.1 mRNA upstream 231253 10355226 ~ 10359434 (-) False LOC113537273
XM_034300203.1 mRNA upstream 231253 10355226 ~ 10359434 (-) False LOC113537273
TU442201 other downstream 201802 9878843 ~ 9918740 (-) True LOC117596103
XR_004577317.1 other downstream 1513702 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 1688118 8429611 ~ 8432424 (-) False LOC113537606
TU441267 other downstream 1791516 8320984 ~ 8329026 (-) False timmdc1
TU440974 other downstream 2204221 7912466 ~ 7916321 (-) False fam155a
TU442843 other upstream 747311 10871284 ~ 10872546 (-) False lipt1
trnar-ucu_14 other upstream 1348907 11472880 ~ 11472971 (-) True trnar-ucu_14
TU444510 other upstream 3185065 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 3200109 13324082 ~ 13324173 (-) True trnar-ucu_15
trnar-ucu_16 other upstream 3201544 13325517 ~ 13325608 (-) True trnar-ucu_16

Expression Profile