RNA id: XM_026931768.2


Basic Information

Item Value
RNA id XM_026931768.2
length 2976
RNA type mRNA
GC content 0.48
exon number 6
gene id etaa1
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 14476538 ~ 14482864 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCCTCTCGAACAGGCACGCGCACTGGCTCATGGGAAAGAAAAGAGTAACTTGGCGGTTAGCTTGAATTAACAAACAAACCATGTAGACGTCAAAGGCGagctaataaacagataaattatTGAAACTAGGTGTCAGAAGTAAGCTGTTGgtttaatgtttctttaaaatatgcGCTGTAGGCGCCGGGAAACAGTATGAATGACGGGAGGAAGAACTGCAGCTCGACGCCGGAGGAAAACCAGACTGAGATACTGagaataacacaaaacaaattaaaactaaaCAGGCTGAAGAGGAGCCCGAAAACAAACCAGACTCCGAAATCAGACTTTACTGACTTTAGAGCTGAAACCGATTTCAAAACACCAACCCGTGTACCGAAGGTGGGTTTCAGGAGCTCTGTTACTGAAGAATCTCCAAACAACGATTATGAACTTCAGCATGAAATCATCTGGGATCCAACGTCACCCGCTACTCCCGTCAGGACCGGACGGGGCCGGAGGAGGACCGCTGTTTTCAAATCAATGGACATATCAGACATCGTCAACAGGATAGCTCCAAAGAACAAGAAGCTGGAGGAGGCGGAGTCTTCTTTGCTGCAGTGGATTGGGGACACGGCTGTTCCGTGCACACCAGAAATCCGAGAGCCCAGGACCAAGCCCAAACCAACAAGACAAAACCCTGTGGCTGACCTGCTGAAGTTAGCGAAGCAGTTCGACTTCAACATGATCCAACAGGAGGAAGCTCATCTCCAACCAAACCCTCAGAGCTCTGCGGAAGCCATGCATGAAGACCATGATCTGTTTTTCAATGAGAACGACCCACCAGCttcaccacagacacactctgAAGCTAAGAGACCACCACTGGGTTTGGAGGACACCAGAATGAACGGCAATGATCCTCTGGGTGATCTGGGTCCCATACAGGAATTGGATGATGATCTGGATTTGCTCTTCGAGGGTTCGACGCAGGAGGTCAGCGGCGGCCTGAGCCAGGGTTTCAGCGCTCGTTCTCAGGACGCGGCTAAAGTTTCGCCTAAGCGTGGTGTGAATCTTGCTGCTAGAGCGAGTGCTAACTTGGTAAATGTGTGTGGCGTCACTCGAATGGGCGGAGCTTCTGAATCAAGCGCCGTTCGTGTGTGCGTGGCCGCACCAACACTCAGCACGATCAAGCAGCTGCGAGTAGCTGATGATTTTGATGACGACTGGAACAATGATTTGCTGGACGACTCACTGGTGATGGAGATGACCCAAAACCCGGAGCTGTTCTCCGCACCTCAGTGCAGCTCGACACAGAAACAGACGAACAAAAACAGTGGCTCAGCAAACACCGTTTACCGCCGGAATGGTGATAAAAAAGCGAAGTCTGGAGAAGTGCAAAGGTTGAATCAGAGACTTGAGAGCTTTCAGTGTGGCCAACACTGGAACAAGGCTACAGGAAATGAGAATGCTAGGCAAAGTGGATTTCATGCAAAAAAGGGTCCAGAAATGCAGGTTTTTTCTTCCAGCAAAGTTCCATCAATGGTTCCTGGTTCCCATAGTGTATCTAAAACTAATTATCAACCCAAGAAAACAATGGAAATCCAACGACCATTAGCAACCACCAGTGCTAACTCCACGTGGAAGGTTCAATCTCAGACTACAACCTCGTTAGTTTCCAGATCAGACCCGTCTAGATCTGTTCCCTCAGCCACAATCGCAACAACTCCCAATTTCAGGATCAATAAGGTCACTGAGGAGAAGGAAAGCCACCCAACCGTGGAGGACGATGTCCTTAGTGACCTCGCAGCCGAGGACCTGGACTCCATCTTTGCGTCAGATGACATCTGGGACGACGGGGCAGACGACGATGACCTGTTCTGCGAAGCATGTGGGAAGGTGGAAGAATCCATGGCTGAACCGGAACCTCCTCCGAAAGCATCCGTATCAAAATCGGCACCACAGAGCAGTCGTGTGCAGAGTGGTCAGAACACCATGGGTAAatatgagagtgtgtttgtgcggCCGTCTCCATCTAACACTCAGGTTTATGACCGCAGCTCTACTGGGAACCGAGCGCCATTGAATACCGAAGTTCTTCCTGGAGCACATAATAATAACGCTTCAGCACTGGACAAGAGTACGATGAAGTCATCTGAGAGAAAGTACAAATTTAGCcatgttaaaagcactacaggaacaggaagtgcCGCCTATAATGCCGCTAGACAGGTTAGTGAGAGCACCACGCCAACCACCGTGCAATCATATCAAAGAATTCAAGAGAACCATCAGTTCAAAAAGCCTTATAGCACCTTTAATGCTGCACCGGCTGTTTCCAAAGATGTGAGTAAAGCGGTGGTGACGAGATGCAGTGACGCTGAGATCGAGAGGAAGAAGCAGCAGGCCATGGAGAGGCGGAGACTCCGAATGCTGGCCAATCAGAACCTTCAGGCTCCTGTATGACATCCTGTAACCATGAAGATGCACGAAACTGACCCGGTGATAGTGGCAGGTCTAAACTGTCCAGCGCTCTGAGCGCTAATTTGCCACGTTTGGAGATAAAACACTGGCCTGGATCTTCTCACGGTCAGTTGTTCTGAACAGAATCTCTAACAGCTGAGTCTCAGCAGGGGCTCGTCAGCTGAATGTGTTCTGCTTCGGACCTCAGAAATCCATGCTGTAGCTACAGGAAATCAGGGGACGTTTGGAATTTTTGCagcacatctgtctgtctggcaCTTTTGAATGGTTGTAGTGTTCGTATGAAAATGTTCCTCACTGTCTCTAAGTCTTGACTGTCTTTCAATTTTATTCCTGATGAAACTGgtcctaaattttttttttcttctatttgttTAGGTCTTGTAgatatgtgtattatttttgttgtacaGATGAAAAAGAGATCCAAACCTCCAAATTCACTCggtgaataatattttaataataatgttttattcccattctattaaaaatatcagtaaaCCCCA

Function

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
ko03030 DNA replication
ko03420 Nucleotide excision repair
ko03430 Mismatch repair
ko03440 Homologous recombination

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU445336 lncRNA downstream 10030 14462142 ~ 14466508 (-) True G376055
TU445324 lncRNA downstream 21069 14383208 ~ 14455469 (-) True G376048
TU445329 lncRNA downstream 88663 14386338 ~ 14387875 (-) True G376050
TU445312 lncRNA downstream 136148 14322184 ~ 14340390 (-) True G376038
TU445153 lncRNA downstream 201420 14274327 ~ 14275118 (-) False dand5
TU445374 lncRNA upstream 49503 14532367 ~ 14532684 (-) True G376093
TU445412 lncRNA upstream 175082 14657946 ~ 14661311 (-) True G376127
TU445429 lncRNA upstream 199523 14682387 ~ 14684328 (-) True G376143
TU445465 lncRNA upstream 256505 14739369 ~ 14739807 (-) True G376171
TU445467 lncRNA upstream 256616 14739480 ~ 14739807 (-) False G376171
XM_034299883.1 mRNA downstream 45992 14411372 ~ 14430546 (-) True aplf
XM_026931791.2 mRNA downstream 105851 14361464 ~ 14370687 (-) True ctsh
XM_026932150.2 mRNA downstream 123384 14345342 ~ 14353154 (-) False prdx2
XM_026932149.2 mRNA downstream 123384 14345342 ~ 14353154 (-) True prdx2
XM_026932339.2 mRNA downstream 200001 14274398 ~ 14276537 (-) True dand5
XM_026932003.2 mRNA upstream 5930 14488794 ~ 14524516 (-) False meis1a
XM_026932002.2 mRNA upstream 5930 14488794 ~ 14524516 (-) True meis1a
XM_026931754.2 mRNA upstream 71627 14554491 ~ 14567086 (-) True actr2a
XM_034299962.1 mRNA upstream 86776 14569640 ~ 14579218 (-) True atg4da
XM_026931702.2 mRNA upstream 86776 14569640 ~ 14579217 (-) False atg4da
XR_004577346.1 other downstream 201408 14274817 ~ 14275130 (-) False dand5
XR_003403798.1 other downstream 437552 14038854 ~ 14038986 (-) True LOC113537776
XR_003403796.1 other downstream 437940 14038528 ~ 14038598 (-) True LOC113537774
XR_003403797.2 other downstream 438676 14037731 ~ 14037862 (-) True LOC113537775
TU445045 other downstream 445659 14027294 ~ 14030879 (-) True G375826
TU445430 other upstream 200238 14683102 ~ 14684328 (-) False G376143
TU445400 other upstream 214375 14697239 ~ 14712377 (-) False ifngr1
TU446065 other upstream 972915 15455779 ~ 15457027 (-) False dpy30
TU446066 other upstream 972915 15455779 ~ 15458205 (-) False dpy30
TU446067 other upstream 972915 15455779 ~ 15457083 (-) False dpy30

Expression Profile