RNA id: XM_026931769.2


Basic Information

Item Value
RNA id XM_026931769.2
length 2317
RNA type mRNA
GC content 0.49
exon number 6
gene id etaa1
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 14476538 ~ 14482864 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCCTCTCGAACAGGCACGCGCACTGGCTCATGGGAAAGAAAAGAGTAACTTGGCGGTTAGCTTGAATTAACAAACAAACCATGTAGACGTCAAAGGCGagctaataaacagataaattatTGAAACTAGGTGTCAGAAGTAAGCTGTTGgtttaatgtttctttaaaatatgcGCTGTAGGCGCCGGGAAACAGTATGAATGACGGGAGGAAGAACTGCAGCTCGACGCCGGAGGAAAACCAGACTGAGATACTGagaataacacaaaacaaattaaaactaaaCAGGCTGAAGAGGAGCCCGAAAACAAACCAGACTCCGAAATCAGACTTTACTGACTTTAGAGCTGAAACCGATTTCAAAACACCAACCCGTGTACCGAAGGTGGGTTTCAGGAGCTCTGTTACTGAAGAATCTCCAAACAACGATTATGAACTTCAGCATGAAATCATCTGGGATCCAACGTCACCCGCTACTCCCGTCAGGACCGGACGGGGCCGGAGGAGGACCGCTGTTTTCAAATCAATGGACATATCAGACATCGTCAACAGGATAGCTCCAAAGAACAAGAAGCTGGAGGAGGCGGAGTCTTCTTTGCTGCAGTGGATTGGGGACACGGCTGTTCCGTGCACACCAGAAATCCGAGAGCCCAGGACCAAGCCCAAACCAACAAGACAAAACCCTGTGGCTGACCTGCTGAAGTTAGCGAAGCAGTTCGACTTCAACATGATCCAACAGGAGGAAGCTCATCTCCAACCAAACCCTCAGAGCTCTGCGGAAGCCATGCATGAAGACCATGATCTGTTTTTCAATGAGAACGACCCACCAGCttcaccacagacacactctgAAGCTAAGAGACCACCACTGGGTTTGGAGGACACCAGAATGAACGGCAATGATCCTCTGGGTGATCTGGGTCCCATACAGGAATTGGATGATGATCTGGATTTGCTCTTCGAGGGTTCGACGCAGGAGGTCAGCGGCGGCCTGAGCCAGGGTTTCAGCGCTCGTTCTCAGGACGCGGCTAAAGTTTCGCCTAAGCGTGGTGTGAATCTTGCTGCTAGAGCGAGTGCTAACTTGGTAAATGTGTGTGGCGTCACTCGAATGGGCGGAGCTTCTGAATCAAGCGCCGTTCGTGTGTGCGTGGCCGCACCAACACTCAGCACGATCAAGCAGCTGCGAGTAGCTGATGATTTTGATGACGACTGGAACAATGATTTGCTGGACGACTCACTGGTGATGGAGATGACCCAAAACCCGGAGCTGTTCTCCGCACCTCAGTGCAGCTCGACACAGAAACAGACGAACAAAAACAGTGGCTCAGCAAACACCGTTTACCGCCGGAATGGTGATAAAAAAGCGAAGTCTGGAGAAGTGCAAAGGTTGAATCAGAGACTTGAGAGCTTTCAGTGTGGCCAACACTGGAACAAGGCTACAGGAAATGAGAATGCTAGGCAAAGTGGATTTCATGCAAAAAAGGGTCCAGAAATGCAGGTTTTTTCTTCCAGCAAAGTTCCATCAATGGTTCCTGGTTCCCATAGTGTATCTAAAACTAATTATCAACCCAAGAAAACAATGGAAATCCAACGACCATTAGCAACCACCAGTGCTAACTCCACGTGGAAGGTTCAATCTCAGACTACAACCTCGTTAGTTTCCAGATCAGACCCGTCTAGATCTGTTCCCTCAGCCACAATCGCAACAACTCCCAATTTCAGGATCAATAAGGTCACTGAGGAGAAGGAAAGCCACCCAACCGTGGAGGACGATGTCCTTAGTGACCTCGCAGCCGAGGACCTGGACTCCATCTTTGCGTCAGATGACATCTGGGACGACGGGGCAGACGACGATGACCTGTTCTGCGAAGCATGTGGGAAGGTGGAAGAATCCATGGCTGAACCGGAACCTCCTCCGAAAGCATCCGTATCAAAATCGGCACCACAGAGCAGTCGTGTGCAGAGTGGTCAGAACACCATGGGTAAatatgagagtgtgtttgtgcggCCGTCTCCATCTAACACTCAGGTTTATGACCGCAGCTCTACTGGGAACCGAGCGCCATTGAATACCGAAGTTCTTCCTGGAGCACATAATAATAACGCTTCAGCACTGGACAAGAGTACGATGAAGTCATCTGAGAGAAAGTACAAATTTAGCcatgttaaaagcactacaggaacaggaagtgcCGCCTATAATGCCGCTAGACAGATGTGAGTAAAGCGGTGGTGACGAGATGCAGTGACGCTGAGATCGAGAGGAAGAAGCAGCAGGCCATGGAGAGGCGGAGACTCCGAATGCTGGCCAATCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU445336 lncRNA downstream 10577 14462142 ~ 14466508 (-) True G376055
TU445324 lncRNA downstream 21616 14383208 ~ 14455469 (-) True G376048
TU445329 lncRNA downstream 89210 14386338 ~ 14387875 (-) True G376050
TU445312 lncRNA downstream 136695 14322184 ~ 14340390 (-) True G376038
TU445153 lncRNA downstream 201967 14274327 ~ 14275118 (-) False dand5
TU445374 lncRNA upstream 49503 14532367 ~ 14532684 (-) True G376093
TU445412 lncRNA upstream 175082 14657946 ~ 14661311 (-) True G376127
TU445429 lncRNA upstream 199523 14682387 ~ 14684328 (-) True G376143
TU445465 lncRNA upstream 256505 14739369 ~ 14739807 (-) True G376171
TU445467 lncRNA upstream 256616 14739480 ~ 14739807 (-) False G376171
XM_034299883.1 mRNA downstream 46539 14411372 ~ 14430546 (-) True aplf
XM_026931791.2 mRNA downstream 106398 14361464 ~ 14370687 (-) True ctsh
XM_026932150.2 mRNA downstream 123931 14345342 ~ 14353154 (-) False prdx2
XM_026932149.2 mRNA downstream 123931 14345342 ~ 14353154 (-) True prdx2
XM_026932339.2 mRNA downstream 200548 14274398 ~ 14276537 (-) True dand5
XM_026932003.2 mRNA upstream 5930 14488794 ~ 14524516 (-) False meis1a
XM_026932002.2 mRNA upstream 5930 14488794 ~ 14524516 (-) True meis1a
XM_026931754.2 mRNA upstream 71627 14554491 ~ 14567086 (-) True actr2a
XM_034299962.1 mRNA upstream 86776 14569640 ~ 14579218 (-) True atg4da
XM_026931702.2 mRNA upstream 86776 14569640 ~ 14579217 (-) False atg4da
XR_004577346.1 other downstream 201955 14274817 ~ 14275130 (-) False dand5
XR_003403798.1 other downstream 438099 14038854 ~ 14038986 (-) True LOC113537776
XR_003403796.1 other downstream 438487 14038528 ~ 14038598 (-) True LOC113537774
XR_003403797.2 other downstream 439223 14037731 ~ 14037862 (-) True LOC113537775
TU445045 other downstream 446206 14027294 ~ 14030879 (-) True G375826
TU445430 other upstream 200238 14683102 ~ 14684328 (-) False G376143
TU445400 other upstream 214375 14697239 ~ 14712377 (-) False ifngr1
TU446065 other upstream 972915 15455779 ~ 15457027 (-) False dpy30
TU446066 other upstream 972915 15455779 ~ 15458205 (-) False dpy30
TU446067 other upstream 972915 15455779 ~ 15457083 (-) False dpy30

Expression Profile