RNA id: XM_034300228.1


Basic Information

Item Value
RNA id XM_034300228.1
length 2648
RNA type mRNA
GC content 0.45
exon number 7
gene id blzf1
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5976377 ~ 5983797 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTGGACCGATTGATTGTcttgttgatgtttttatttgaatatattcATCTAATCAAATGtatgtctaattttttttaaaaagagacctttttattttatgGTTTAAGGCAAATCATACAAATCAGACTTGCACTGTGTGGAATTCTTTACGATTCATTTCATCCTGCTGCTGCTTTAAGGATCTACTTCAACCATGTCTGCTGACATCATGAAAGACCCCTCTGTCGTGTTTGTCCGTGGCCCTGGTGATGGCATGGAGATGGCCAAACCTGCGCTGAGCCCGGAGATGTCTGTGGAGACTCTGCCTCTAAAGGTATCTCCGCCTAGACAGTGTCCCAGGACTGCGCCGGCGTCCCCTGGTGTCCTTCACCTGGGAAAAGTGAACAGGGAGTCCTGCGCTGAGGTGGAGGCCGTGCGCATTGTTGTACCACGTGCTGCCATCGTCCGGACCGTGCGAGCCGGTGCCCACGCTGACAGCAAGACGGATGAAAGAGGATCAGGGTTTCCCAACCATGGTGAGGATCGTCCTCCGTCCCCTTCCTCAGAGCCACAGGACTATAAGAGCGTTGTGGAGAAGCTGCAGAACTCTGAGCGCAGGCTGCTGCAGGACAAAGAGGGGCTTTCGAACCAGCTGCGTGTTCAGACCGAGGTAAACAGAGAGCTGAAGAAACTTCTTGTGGCCTCAGTAGGCGACGACTTGCAGTATCACTTTGAGCGACTGTCGCGAGAGAAGAACCAGCTCATTCTGGAGAACGAGGTTCTGGGCCGCAACCTGGCGCACACGGCCGAGCAGCTGGAGCGCATGAGCATTCAGTGTGATGTGTGGAGGAGCAAATTCCTCGCCAGCCGAGTGATGGCTGAGGAGCTGACTAACGCCCGAGCTGCTCTCCAGCGACAGACCAGAGAGGCTCAAACTGCCATCCAGGACCTGCTGCGTGAGAGAGAGGAGTTCTCCCGAGacatgatgcacacacacagGTCTCTGGAGCAGCTGCTAGTCTCGCTACAGTGGGGTAGACAGCAAACCTACTACCCCAGCGCACAGCCGCTCAGCACCGGAGAACTGGCCGCGGCCAATCACAAGCTGGCTGACGCCATCAATTCGCATCTGCTGGGAAACATAGGCAAGAGCAGCACTAGTGTGAAGAGCAGCTCAGCTTCTGAACTCTGCAACACACCGGCTGAGAAAATGGCTGAAAAGGTACTCAGGATTCTGGATCCCATATCCTGCCCAGACACCGGGGGTGACTCGACCACTACCGACTCCACCGCTTCTCCTTTCCTTCATAATAAGAAAAGCATCGGACGTTTTCACCCGTACACTCGCTATGAGAACATCACCTTTAACTGCTGCGATCGCTGCACTGGCGAGCTGCTCGTCCTCTAAGACAAGCtcatattaaaggaatactccaatgttttttttttttaacccatttacTTCATCTGTAGTGTTTGTGATTACTATAAACAAGAACTTTGACACTTTTGCTTGTACAGAATAGAGaccaaaaaaaacaggaaaacctGTTTACCTGAAATCTACTTCTAatagaagtctaagggcagatgtGGAATTCCGTCAATAAGGATTTAAAGCTGTATACTCGACTATAATACACGAACAGGACAATTTCTGAAAGGACAAATTATCCAGATTTAAAGCTACATGTACAAACGGCTTTGATTAAAGTAGTTATGAAAGTGTTTTACATGTCTATCAGGTGCCCCTAGACTTCCCTTCTAAGTGAGCTTTAAGTAAACggattttctgttcttttctcagtaaagCGTTTGTCtgagatttataaatatatgcatTACAGATGTGGTCAATAGAGATTAGATTAAAAAACCACTGGAGTTTCCCTTAAATTACACTTTGTTACACTTcctattttcttttcttgttatcttgtttttttttttcagtccagaTCTGTGATACTAATACacatgagtgcaaaagtttgcataccctcaGGACAGAAATGTAGTGTGCTAGGATTTTTACAGATGTTCCTCCATTAGCACAGAGTTTGTCATGTGTAGTCAGTTTCGCATCTCCCTTCTGAATgtgaataatgtaaatattctctaatGACATGTTTGCCCGTGCTTTGCTCTTAAAACCTTCCTCCGAGCAGCTCTGGGATCCTCAGTGTAGCCCCATCATGCTTTcttcctccatccctccatctttctTCCTTCCATCTGTTACATCTGCCAGATTGTTTGGCAGATCATTACCCATTTTCCTACTATATGTTATAATTCTGCtaccttttcctttttaaaacgttagggatgcaaacttttgtcCTTCACTGTATCAGAAGATACACATCCGCTATACTGTAATATAACTATACGCctgactttttacttttttataacAACTGATTATTTGTACTAAAGCCGGACATGACACTATATCACTATATCTATGTTGGATTTTCTGATCACATTTGTGAACTGATGATTTCATTGCATTAATTTGAACAAAATATGATTAACTTCTTTTGGCTCATGCGAGTGCAGCGTTGATtcccaacaaccacagaaataGCGGAGCATCTGATGTTAATCACAGTGCATGATAAAACTGCTGGCGTTGTTATCTTCACATAATAAATGTGGCAATAAA

Function

GO:

id name namespace
GO:0043001 Golgi to plasma membrane protein transport biological_process
GO:0007030 Golgi organization biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439651 lncRNA downstream 80689 5892326 ~ 5895688 (-) True G371121
XR_004577356.1 lncRNA downstream 84580 5886846 ~ 5891797 (-) True LOC117596178
TU439645 lncRNA downstream 90765 5880476 ~ 5885612 (-) True G371117
XR_004577342.1 lncRNA downstream 457997 5510716 ~ 5518380 (-) True LOC117596170
TU439411 lncRNA downstream 468008 5508102 ~ 5508369 (-) True G370942
TU439680 lncRNA upstream 9915 5993489 ~ 5994747 (-) True G371147
TU439686 lncRNA upstream 14429 5998003 ~ 5998159 (-) True G371152
TU439687 lncRNA upstream 15274 5998848 ~ 5999474 (-) True G371153
TU439665 lncRNA upstream 17605 6001179 ~ 6001613 (-) True G371135
TU439664 lncRNA upstream 18264 6001838 ~ 6004790 (-) True G371134
XM_026932062.2 mRNA downstream 2938 5971040 ~ 5973439 (-) True txnl4b
XM_034300231.1 mRNA downstream 7312 5963752 ~ 5969065 (-) True mrpl16
XM_026932220.2 mRNA downstream 24064 5942039 ~ 5952313 (-) False LOC113537623
XM_034300324.1 mRNA downstream 24264 5942039 ~ 5952113 (-) True LOC113537623
XM_026931713.2 mRNA downstream 56178 5913959 ~ 5920199 (-) True mrpl39
XM_026932021.2 mRNA upstream 32152 6015726 ~ 6033393 (-) True tpp2
XM_026932022.2 mRNA upstream 32152 6015726 ~ 6033392 (-) False tpp2
XM_026932176.2 mRNA upstream 152933 6136507 ~ 6160962 (-) True LOC113537602
XM_034300227.1 mRNA upstream 178540 6162114 ~ 6190394 (-) True cenpe
XM_026932058.2 mRNA upstream 208054 6191628 ~ 6200180 (-) True grk1a
XR_003403780.2 other downstream 24064 5942429 ~ 5952313 (-) False LOC113537623
XR_003403737.2 other downstream 429345 5534415 ~ 5547032 (-) False LOC113537235
XR_004577328.1 other upstream 36113 6019687 ~ 6033393 (-) False tpp2
XR_004577329.1 other upstream 375065 6358639 ~ 6363203 (-) False LOC113537742
XR_004577289.1 other upstream 1075261 7058835 ~ 7068467 (-) False LOC113537271
TU440391 other upstream 1075261 7058835 ~ 7068531 (-) True LOC113537271
TU440780 other upstream 1734689 7718263 ~ 7724795 (-) True G372086

Expression Profile