RNA id: XM_026931777.2


Basic Information

Item Value
RNA id XM_026931777.2
length 3740
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC113537349
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 7184802 ~ 7201325 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aatgattTTCATAGGACAACAGCTATGGAGTAGCTCGAAACAGGATTTTCAGATTCCCAGCTGCTTAACCACTGGAAACAGCAATGAAGTGAAACTTGCCAGTGCCTCTTTGGTGCTATTTGAACATGGATGTTCAATCATGTTGCCTTTTCATTGAGCTTGAAGTGTTCTCTGAGTCAAACTAAAACTTATTGGAAGTGAAACCAGCATCTGTAAGCCCGAAAAGGCCCACTGTGATGACGTCTTAGGCCTATTACTGGTGTTCAACATGGCCGCTGTGGTTCAGCAGACCGAGGGCGCCTGGGATGGCGCAAACAAACAAGAAGATGACTCTTTGCAGTTGGTAGATCCATCCTCTTTCCCAGCCGTAATCGTGGAGCAAATGCCACATAGCCACCTGCTCAATTATTCGGGTCTGACTTGTGACCAGCCGTTAAGACTGGGTTTGGAGCGAGATACTGTTGATGACATGACACAACTCACAGTGGAAGCTTATCAGAGTGGTAATGAAGATGCCATGATGGAAAGTGCAGAAGCTGCTGAAGCTCTGATGAACATCGATTCGTCCACTCCTCTTGCACTAGATGAGAAGCAGATCCctcaaatgttttttttgacGTCGTCTCTGGTAGAAGGTAACCAGTTTTTAACGGATGGTGTTGTCGGACAGCAACAGTGGATCCATCTTCAAAAAGGATCTCTACCAGAAGACAAACCAAAGGCTAAAAAGGGTAGAAGGCCCAAACGAGCAAGGGCACATTCTCCAATGCCTGACATAACTATTAAGAAGAGCAAGGACAGCAAAGGAAATACGTTGTACCTTTGGGAGTTTTTGATTGCTTTGCTGCAGGACAAGAACGCTTGTCCCAGATACATCAAGTGGACCAACTGGGAAAAGGGCATATTCAAGCTTGTGGACTCCAAGGCTGTGTCACAGTTATGGggcaaacacaaaaacaaaccgGACATGAACTATGAAACAATGGGAAGAGCACTTAGATACTACTATCAGCGTGGTATCCTGAATAAAGTCGAGGGTCAGAGACTGGTGTATCAGTTTGCAGAGATGCCAAAAAACATTGTCTACATAGGTGATGACAGTGATGGCCCTGGTGGcaataatatcaacatttcACATGAGGATGATGATCACTCCAGTGAGGCATCCATCAATGAACTAACATCCTTAAACTTCACCATTCCCTCCCAATCAAAATTGTTCACTTCTAAAACACCTTCTATGAGTAACAAAGTCCGTAGGGCTGTGAATGGAGGCCAACGTAAGCCAGTTAACAACCCCAGTGAGGTTATAGGAGCCACCAAACAAGCTCGTTCGTTAGGTCTCATCCAGCAACAACATCTACCCATTGTTTCTGCGGAGATGATTAAAACTCTTCAGAATGTCCACTCCATCCAGCCAGGCCAGCACGGGTCGGTTTTCCGCACGGCTCAGCTATTAGAAAGTCTTCGTGACAAGCAAGAGCCCACTGAGGTCAAGCAGGAGCAGCTGGACGTTCAGCCAGAGGGCCAGGCACCTCAGATCGTCACGCTTCAACTGGTACCTGTATCTTCCACTGAGGAAGGAATGGATGGATCTATAACGTCTCCTCAGTTCATCATGCAAGCTATTCCGGAGACCATCCCAGAGGAGGTAACCCTCGTAGTACAGAATGTCACCTTGGACAAGGCTTCTTCTGATCCTTGCCAAGAAGTTGACAAGGAAAAGAGCGAAGAAGCCATCGTCTGTAATTCTGCGTCAAGTAGTGCCTCAGTAGTGACATTTGCTGGAGGGCAACAGTTGGTTTCTCAGCCTTCTGGTACCGTTATCCATTCTGTAGTCACTGCAATGGAACCAAAGATATCAGGTCAGATAAGTGACCCAGACACCAGAGAGGTCTGTGAAGCTCCTGAAAACTCCCATGATGTCCCGCAAAGTCCAGACATGGACATGGATAAGAAGAACCTCACGGAAATAAAGGCGGAGCCATTAAGTGTGGTCATCCTTAATGACTCCTGGGTGGGTTACACTTCCAACGAAACCACAGAGTCGTCAGGCTAAACTCAGGCTAGACTGAAACCTCATTTTGTCCAATGCCATTAAAGCCTTACTCATCACATTCCTTTGGGACTTGCACATGCACTGGAATTTACAGGcactcctttttctttctttgtctcttgtTATTTGTTTGCACCAGCTTTGCCTTGCTATGCCATGCAAAGATTATTTTTTAGGAGGACCAATGATTCTTATGCAGCTTATTCTGACCTTAAACCTTATTTTCCTTACTTAAGTGCCCTAAATCATGTACTGCAATGTTGTTCCTCAGGGTTTTTCTCTGACACAACCAGTAATGTGTCAGTAATGTCGCCATGTAATGGAAGGCCAACTGCAACCACTTTTTATCATTCACAGGAGAGATAGGAAGGACTTAATGATAGCTCATGGATGGTGACTTTTTCTTTAGCAAATCCATTACTAAAGCATAAAATTTAATACTTCTCAGATTAATTAGCGATACTGTATGCATATCTTCTTGGTAAAGATGCACGAATGCAGAGACATGGTAACTGATGGTGGTCTTATGACCATGGTTAAATCGGTATTTTACAAACATCCTTTGTTCATAAATACCCTTATTCATACCTGGATCAAATGTGTGACTTGgctataaatattaacaaaagatgctgtatttttattgacCAAATAAATTTTGTTGCTAAAAAGCTATATGTTTTAAAAGCTGATCCTGTGCTGTTGACTGTATTGCTGTTAATGTTGTTTGAGAAATATATGTGACCAAAAGGAACTGAAAATTCAGGTCTTGCATCAATGTGACAATCATTTCATGTTACTTTACTCACTAAATATGCATATTGTGTTCGAAAGAGGTTGCTAATGATGCACTGCAGCCTGGTTTGAGATGAATCCTTTTGAGATGGAAAAACCAGTGCTGATCTATAAACATTCCTTACCACAAGATACAGCAGTTATActatttgtatacatttttgGATCTGCCCAGGGCCTGCCTAACTTGATACAGGCTCATGCTAAAATCACGTTTTAGGTTAAATATGGTCCAAAATGGAATTTGAAAATTGTAATGGGGAATTTGAAAATTTGGGGTTCACTATTTAGATTTCAAAAACAAAGAACTGGATCTGGAACTTTCTGAAAGTACAGATGCATTTGTCCATGCGCATGTCAGAACTTTTACAAGGTACTTAACATAGTGTATTTTGTTCCGTCCAAACGTTTGATTACACTGACTGCATGTTTAAAATTGATGATCAAAACTCAAATCACATAATGCTGTAGTTTAAAGAATTTTAGACTTAGCAAGCCAATAAATGAACCCAATGCCTGAAAAGATGTATTCCTCTTCCAACATTACCTACTAATATTGAGTCATCTCACTTTTTGTATATGCCAGCTCTTTAACCTATAAtcttcctcttttgttttttgttctgtttgtgttACATGCTGTAGTACTGATAACTGAAACGgttgaatgtgactcccagtttttttattgcattttttattggAAAAGCCTGTACAATGCTCATGGATATGAAAGCCATAATGTTGATGTCTCTAAttaaatatcattgaaaatggCTACCATTTTCCTTAATATTTCATAGAACTATTTTGCTTTCAGTAggaagtttgtttttttaaaaaatatgaatttctTGATGACATCATTAAACAAACCTCAAGTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU440456 lncRNA downstream 1416 7183176 ~ 7183386 (-) True G371793
TU440449 lncRNA downstream 31643 7151438 ~ 7153159 (-) True G371787
TU440274 lncRNA downstream 283459 6891766 ~ 6901343 (-) True G371634
TU440265 lncRNA downstream 303022 6879870 ~ 6881780 (-) True G371625
TU440266 lncRNA downstream 310382 6870572 ~ 6874420 (-) True pspc1
TU440604 lncRNA upstream 161945 7357311 ~ 7378538 (-) False LOC113537388
TU440608 lncRNA upstream 215615 7410981 ~ 7415018 (-) True G371929
TU440643 lncRNA upstream 272423 7467789 ~ 7468460 (-) True G371964
TU440646 lncRNA upstream 280537 7475903 ~ 7476105 (-) True G371967
TU440605 lncRNA upstream 282514 7477880 ~ 7478230 (-) False LOC113537388
XM_026931957.2 mRNA downstream 3320 7156580 ~ 7181482 (-) False sugt1
XM_026931956.2 mRNA downstream 3321 7156580 ~ 7181481 (-) True sugt1
XM_026932363.2 mRNA downstream 88096 7092802 ~ 7096706 (-) True pcdh8
XM_026932060.2 mRNA downstream 94272 7084926 ~ 7090530 (-) True LOC113537541
XM_026932088.2 mRNA downstream 101948 7069178 ~ 7082854 (-) False si:ch211-91p5.3
XM_026931700.2 mRNA upstream 22999 7218365 ~ 7226649 (-) True ednrba
XM_026932157.2 mRNA upstream 58385 7253751 ~ 7302564 (-) False mid1
XM_026932159.2 mRNA upstream 58385 7253751 ~ 7302563 (-) False mid1
XM_026932158.2 mRNA upstream 58385 7253751 ~ 7286797 (-) False mid1
XM_026932156.2 mRNA upstream 58385 7253751 ~ 7286797 (-) False mid1
TU440391 other downstream 116271 7058835 ~ 7068531 (-) True LOC113537271
XR_004577289.1 other downstream 116335 7058835 ~ 7068467 (-) False LOC113537271
XR_004577329.1 other downstream 821599 6358639 ~ 6363203 (-) False LOC113537742
XR_004577328.1 other downstream 1151409 6019687 ~ 6033393 (-) False tpp2
XR_003403780.2 other downstream 1232489 5942429 ~ 5952313 (-) False LOC113537623
TU440780 other upstream 522897 7718263 ~ 7724795 (-) True G372086
TU440974 other upstream 717100 7912466 ~ 7916321 (-) False fam155a
TU441267 other upstream 1125618 8320984 ~ 8329026 (-) False timmdc1
TU441284 other upstream 1234245 8429611 ~ 8432424 (-) False LOC113537606
XR_004577317.1 other upstream 1396041 8591407 ~ 8606840 (-) True tsga10

Expression Profile