RNA id: XM_026931791.2


Basic Information

Item Value
RNA id XM_026931791.2
length 1414
RNA type mRNA
GC content 0.43
exon number 12
gene id ctsh
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 14361464 ~ 14370687 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGtcgcacacactcatacactgacacacacacactcatacactgacacacacacactcatacactgacacacactcgtacactcATAGAGCTGCGCTGTAATCCGCTTGAAACATGAAAATACCTATTTTAACTGTTGCATTTTTGCACTGCGTGTGTGCAACACGTCTCTTTACGGAAGAAGATGAATATGTCTTCAAAACATGGATGTCTGAGCACAATAAACAGTATGGCCTGGATGAGTATTACCAGAGGCTGCAGATCTTCACTGAGCATAAGAAGAGAATCGACACACACAATGCCGGAAATCACAAATTCAGGATGGGATTAAACCAGTTCTCGGATATGACTTTTGCTGAATTCAAGAAATTCTACCTTCTGAAAGAACCTCAGGAGTGCAATGCTACCAAAGGGAATCACGTTAGTGGTGTTGGCTTGTACCCAGACTCCATTGActggaggaagaaaggaaacTACGTCACTGAAGTGAAAAATCAGGGTGCTTGTGGCAGCTGCTGGACTTTCTCTACCACAGGCTGCCTGGAGTCTGTCACGGCAATCGCCACAGGGAAACTCCCTTTACTGgCAGAGCAGCAGTTGGTGGATTGTGCTGGCGCGTTCAACAATCATGGCTGCAACGGTGGACTTCCCAGTCAAGCCTTCGAATACATTATGTACAACAATGGTCTCATGACAGAGGCTGACTATCCCTACGTTGGTCGTGACGGTCCTTGTAAGTTCGATCCTAAGCTTGCTGCGGCATTCGTGAAGGATGTGGTAAACATCACAAAATATGACGAGATGGGGATAGTGGACGCCGTGGCCAGGCTCAACCCTGTGAGCATTGCTTTCGAGGTGGTGTCGGATTTCATGCATTACAAAGACGGAGTGTACACCAGCACGGAGTGTCACAACACTACAGATACTGTGAATCATGCCGTGCTTGCTGTGGGTTATGCTGAGGAGAACGGCACCCCCTACTGGATAGTAAAGAACTCCTGGGGAACCACTTGGGGCATTAATGGATATTTCTACATCGAAAGAGGAAAGAACATGTGCGGTCTTGCTGCTTGTGCATCATATCCATTAGTTTGAAATATTCCGCCAACTGAAAAGGGAAAATCATCAGAAATTCAGCTTCACACCATGAAATTTAAAAGGAAAGCCACAATACATGTATAGAATCtcatcatttttttgtgtgtcaatcaggaataaaacaaatctgctgcattttctaaaaaaaaaatcattttaccaGTTGCTCAGCTTAACTGACATTGATTGCATCAGTGatttgcttttcatttaaatgcCTCATCTTTTTATCAAAGcttttgattgttttataaCTTTATGGATTGGTCTCAGTTCTGCCACctgatttgaataaaaaaaaaaaatcctgcactGTA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K01366 CTSH; cathepsin H

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU445312 lncRNA downstream 21074 14322184 ~ 14340390 (-) True G376038
TU445153 lncRNA downstream 86346 14274327 ~ 14275118 (-) False dand5
TU445072 lncRNA downstream 180850 14106222 ~ 14180614 (-) True rnf11a
TU445099 lncRNA downstream 236206 14121498 ~ 14125258 (-) True G375871
TU445091 lncRNA downstream 276023 14078964 ~ 14085441 (-) True G375864
TU445324 lncRNA upstream 12521 14383208 ~ 14455469 (-) True G376048
TU445329 lncRNA upstream 15651 14386338 ~ 14387875 (-) True G376050
TU445344 lncRNA upstream 89596 14460283 ~ 14524503 (-) False meis1a
TU445336 lncRNA upstream 91455 14462142 ~ 14466508 (-) True G376055
TU445374 lncRNA upstream 161680 14532367 ~ 14532684 (-) True G376093
XM_026932150.2 mRNA downstream 8310 14345342 ~ 14353154 (-) False prdx2
XM_026932149.2 mRNA downstream 8310 14345342 ~ 14353154 (-) True prdx2
XM_026932339.2 mRNA downstream 84927 14274398 ~ 14276537 (-) True dand5
XM_026932201.2 mRNA downstream 114206 14136218 ~ 14247258 (-) False LOC113537614
XM_034299883.1 mRNA upstream 40685 14411372 ~ 14430546 (-) True aplf
XM_026931768.2 mRNA upstream 105851 14476538 ~ 14482864 (-) True etaa1
XM_034299926.1 mRNA upstream 105851 14476538 ~ 14482657 (-) False etaa1
XM_026931769.2 mRNA upstream 106398 14477085 ~ 14482864 (-) False etaa1
XM_026932003.2 mRNA upstream 118107 14488794 ~ 14524516 (-) False meis1a
XR_004577346.1 other downstream 86334 14274817 ~ 14275130 (-) False dand5
XR_003403798.1 other downstream 322478 14038854 ~ 14038986 (-) True LOC113537776
XR_003403796.1 other downstream 322866 14038528 ~ 14038598 (-) True LOC113537774
XR_003403797.2 other downstream 323602 14037731 ~ 14037862 (-) True LOC113537775
TU445045 other downstream 330585 14027294 ~ 14030879 (-) True G375826
TU445430 other upstream 312415 14683102 ~ 14684328 (-) False G376143
TU445400 other upstream 326552 14697239 ~ 14712377 (-) False ifngr1
TU446065 other upstream 1085092 15455779 ~ 15457027 (-) False dpy30
TU446066 other upstream 1085092 15455779 ~ 15458205 (-) False dpy30
TU446067 other upstream 1085092 15455779 ~ 15457083 (-) False dpy30

Expression Profile