RNA id: XM_026931834.2


Basic Information

Item Value
RNA id XM_026931834.2
length 2254
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC113537384
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 6606600 ~ 6610907 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTGCACTGCAGCCTGACCGAGTCTCGCGCTCGCCTCCACCCGCTCAGCACCGCACATGGACTCAGCTCCTCTCACAGCACGTCTCCTTCAGGAAAGCCTCATGGACACTTTTGACGAGATGATATCTGAGGAAGACGGGAATGAGCGACGCGACATCACCTTTCCACCCCATTCCTCATCTCTTTAAACGGACTTTCTGTGGATTTTGCTCAGAACACCTGACCtgatctgatctctctctctctctctctctctgagctacAGTTCTACCAGTATGGCATCCGTGCTCCATCCTGTCCTGTTCCTTCTACTTCAGTTACTTCATGTTCAGTCAAGCTTCCATCAGAAGCCCCAGTGGCCTTTGCAGCGTGTGCCTGTAGTCCTTCCTCAACAGACTGAGGAGCGTCCGCCCCCTCATTTCATCGGCCCAGCTCATCTGGAAGTGACCTCTTCCTGTGGTCCCGAGTGTCACAAGAAAGCCCCAACACCCAGCTACTGGGACCTGCGAAGCTTCCTGTCCTATGAGACTCTCCACTCAAATGGCCAGCTGACTGAAACAGTTGTGGGAATCTATGGCTTCAACCCAAACATGCTGAAGAGCCCTGCCGCTGAGCAGGGACGTTCCAGAGCCAAGCGCCAGATCTTTGGCCATGATGGTCGCTTCAGCATTGTGGGCCAGGACTTCCTGCTGAACTACCCCTTTTCGACTGCTGTGAAGCTCTCCACAGGGTGCTCAGGCACGCTAGTGGGTAACCAGCATGTTCTCACTGCAGCCCACTGCATCCATGATGGAAAGAACTACGTAAAAGGTGCACAGAGGTTGCGTGTGGGTTTTCTGAAGCCACGGCAGAAGGACCAACCATCTAACAACAGCACTGACAACAAGATGAAGTTCCAGTGGATCAGAGTCAAGCGTACCCATGTGCCCAAGGGCTGGATAAAAGGCAACGCTAATGAAATTGGCATGGACTATGATTACGCCCTCCTGGAACTCAAGAAGACTCACAAGCGTAAACACATGAAGCTGGGAGTGAGTCCTGCTGCCCAGCAACTGCCTGGTAAACGAGTGCAGTTCTCCGGCTTCGACAACGATCGAGCAGGCCAGCTGGTCTACCGCTTCTGCAAAGCCGGGGATGAAACCTACGACCTTCTGTATCAGCATTGTGATGCTCAGCCTGGAGCTAGCGGCTCTGGTGTTTATGCCCGGCTGTGGGACCGCAGGCGCCGCCGCTGGGAGCGAAAGGTGATCGGCATCTTTTCGGGACACCAGTGGGTGGACCTCAATGGTGCCCCCCAGGAGTTTAACGTAGCAGTGCGCATCACGCCTCTTAAATATGCCCAGATCTGCTACTGGATCAAAGGGAATTATGTGGACTGCAGAGAAGGCTGAACTTAAGCTTCAGTATTATCCTTACCTTAAGTAAAGTTCTGTGCATCCTCTAGATTCATTCAAATGGAGTTTAAACACCTACGAATACATGAAACACTGGCATGTAAACACTGAATGAACTtaacacacccattcacacactgtaAATATTCAGAAATTACAAGAATTTCTAGAATTTCTCTTATCTACAATTACGTAACCAAATAATTTTGCACAGTCTTTAGTTTCAGCTGGCCTTTACAATAGTATAGCTCCAATTTAGGATTCATCTTTGATAAGTCAACAAAACTGTGGTTAAGCTTTCCATTGGAGCAAAAGAGCAAACAATTGTGAATAGATAGAAAGAACATGAAAGTGGCAGGATGGACCTAACATCACCAAAGATGGTTTTCAATGACTGTGGACTTCTCCAGTACAAAGCACTGTAGGCTTTAAGCCTTTGTGAACGTTTTCATTGTGAAGAATGTACTCCAGTTTAACCAAAGGTGCTTTTTAAAATAGCTATCCAAGTCAAACATACAGAAGGCTTTAACTACTGGATGAACTCTGTCTGCGTGGATTGGCATGTGGTTTCTATTCTGTTAGCGACCCCTAGTGGTCAAAGACATTACATCTAATGGCCACAAGACCCAAGTCTGAAAAAGCGTTGGCGGATGGTGCTTCCTTACACTAATCACAGAACTTTTTTTGAATTAAATAAGTACTCGGAGATGCAGATGTTATATACTTTAAATGTTATATACCAATGTCAGCACCTAAAGCactttgaatttttaaattactgATTTCTTTAGTCATTAACAGCTTTGAATGATAATTCACTCTGTACTAtacaaatgtttattaaatgctTTTGAAAGGAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU440098 lncRNA downstream 39655 6563849 ~ 6566945 (-) True G371487
TU440057 lncRNA downstream 70596 6529397 ~ 6536004 (-) True G371454
TU439992 lncRNA downstream 243449 6362554 ~ 6363151 (-) False LOC113537742
TU439664 lncRNA downstream 601810 6001838 ~ 6004790 (-) True G371134
TU439665 lncRNA downstream 604987 6001179 ~ 6001613 (-) True G371135
TU440232 lncRNA upstream 197586 6808493 ~ 6815071 (-) True G371595
TU440272 lncRNA upstream 256837 6867744 ~ 6867960 (-) True G371632
TU440266 lncRNA upstream 259665 6870572 ~ 6874420 (-) True pspc1
TU440265 lncRNA upstream 268963 6879870 ~ 6881780 (-) True G371625
TU440274 lncRNA upstream 280859 6891766 ~ 6901343 (-) True G371634
XM_034300341.1 mRNA downstream 105987 6468517 ~ 6500613 (-) True LOC113537739
XM_034300340.1 mRNA downstream 105987 6469390 ~ 6500613 (-) False LOC113537739
XM_026931662.2 mRNA downstream 145049 6451575 ~ 6461551 (-) True dusp27
XM_034300160.1 mRNA downstream 156681 6432009 ~ 6449919 (-) False LOC113537523
XM_026932037.2 mRNA downstream 156683 6432009 ~ 6449917 (-) True LOC113537523
XM_026931710.2 mRNA upstream 30157 6641064 ~ 6660087 (-) True LOC113537292
XM_026932035.2 mRNA upstream 49878 6660785 ~ 6666073 (-) True hikeshi
XM_034299930.1 mRNA upstream 57316 6668223 ~ 6675921 (-) True eed
XM_026931661.2 mRNA upstream 57316 6668223 ~ 6675919 (-) False eed
XM_026932045.2 mRNA upstream 80757 6691664 ~ 6699031 (-) True nfkbiz
XR_004577329.1 other downstream 243397 6358639 ~ 6363203 (-) False LOC113537742
XR_004577328.1 other downstream 573207 6019687 ~ 6033393 (-) False tpp2
XR_003403780.2 other downstream 654287 5942429 ~ 5952313 (-) False LOC113537623
XR_004577339.1 other downstream 1059568 5534472 ~ 5547032 (-) False LOC113537235
XR_004577289.1 other upstream 447928 7058835 ~ 7068467 (-) False LOC113537271
TU440391 other upstream 447928 7058835 ~ 7068531 (-) True LOC113537271
TU440780 other upstream 1107356 7718263 ~ 7724795 (-) True G372086
TU440974 other upstream 1301559 7912466 ~ 7916321 (-) False fam155a
TU441267 other upstream 1710077 8320984 ~ 8329026 (-) False timmdc1

Expression Profile