RNA id: XM_034300055.1


Basic Information

Item Value
RNA id XM_034300055.1
length 2635
RNA type mRNA
GC content 0.44
exon number 13
gene id LOC113537394
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 15986787 ~ 15999994 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGAGATAGATATTTGTTGCAATTTGGGTTTTCTAAACTCTAAtgcatgttaaaaataatagcaATTGTCTAGTTCAACATCCATGGTTTGGATTATACAAATATGGACATTATTTGTAAGTTTTGTGAGATAATCGGGAAGGACTGCACTCCATGATTTCAACTCTCTGAGGATTGGTGGCGATTAGCCGAAAACTGAGTCTGATTGAATCCCGTACGGAGTTCTCCGCCACAGATTCGGAAGTGGAGAAGCAGATAGCGGTCTGGATGACCGGAAAAGCCTGGAATTTTGCCGCGAGGTTGTTTCATACCGCGGGGACACGCCATGTTTCCACAGTCAGGCCTGCTACCAGGGGTTTGTGAGTGAATGATAGGTAATTATACAGGCAGCCCTGATGTTACTCAGATTGACTCCTCCCCTTTCTCTGCTGTTTCTGCTCATGATTTCAGGAGTTGCTGCAGGAGTTGCTGTTTCTCAGGACTGGGATGTGTATTACACACCAAAGTCTATCTGTGCTCTAAAGGGATCTACAGTGACCATGGGCTGCAGATACACATATCCAGCTGGTTACACAGTTGAGAGAGGTATCTGGAGCAGAGAGTTGGTTACAGATAAAGAGCCTCCTGATCTGACTTCAGACCCAAAGTACAGCGGCAGGGTTCAGTACCTCGGAGACACATTGCGTGACTGCAGTCTCAGACTGAGTGATGTGACAGAACAGGACCAAGGCAAATACTACTTCAGATTTATAACAACATTTGCTGGAGGAAAGTATCAAGGTCAAGATGGAGTTGACCTTTCTGTCACAGAGCTCGAGGTACAGATTCCTGATAGAGTGATTGAAGGAGATGCAGTCACTCTCACCTGTAAAACCAGGAACAGACTGAGTGGCAATACAACATTTATCTGGTACAGAAGTGGACGTCGTTTATCCTCCTCCACTAACCTGCTCCGTCTGCCATCAGTCAGTCAGAGCGATGTAGGCAGATACAGCTGTGCTGTACAAGATAGTCAGTCCTGTGATGTCACTCTTGATGTCCAGTATCCTCCAAAGAGAGTCTCAGTGTCCATCAGACCCTCTGGTAAGATAGTAGAGGGccgttcagtgactctgacctgcagcagtaATGCTAAACCACCTGCACAGAACTACACCTGGTATAAGGGAGCATCCTATATCAGAAGAGGAAAAACCTACACCATCAACAAGACCAGCTCTGAGGACAGTGGAAATTACACGTGCCGGGCTGGAAATGAACATGGACAACAGTCCTCTACTGCTGTGTCTCTGAATGTCCTGTCTTCTCCAAAGAGAGTCTCAGTGTCCATCAGTCCCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGCACACCTACACCTGGCATAAAGGAACATCCTATATAGGAACGGGAAACACCTACACCATCAACAAGATCAGCTCTGAGGACAGTGGAGAATACAAGTGCAAGTCCAGTAATCGATACGGAGAGAAATACTCTGATGGAGTgactttaaatgttttgtATCCCCCTAAGAATGTCTCAGTGTCCATCAGTCCCTCTGGTGAGAGAGTGgagggcagttcagtgactctgaactgcagcagtgatgctaacccACCTTTGCAGAACTACACCTGGTATAAGGTGGATGAAAGCTCACCTGTAGGATCTGGACAGAGTTACAGCTTCACTCTGAGGTTCAGCAACAGTGGAACGTTTTACTGCGTGGCTCAGAATAAATATGGGAATCAGACAGCAGCTGCAGTGGCTCTCACTCTAAATGGGGGCACAAATTTAGTTCTGTATGTAGTTCTTGGAGTGACAGTTGGATGTGGATGTTTATTTGCCATCATTGGTGTTTTATGTATGAGgagaaagagaagaggaggTTCAGCTGATGATACCAAGTCTGGCCAGAATGTTCACTCCAGTCCTACTGAAGACACGTACACAGCTCTTGATCTTCAGACCAGGTCCTCCAGTGAAGTGTATGACACACTTGGAAACATTTACTGCAATCCTACTGAAGACACGTACACAGCTCTTGATCTTCAGACCAGGTCCTCCAGTGACGTGTACAGCACACTTGCAacGGATCACCCGAGTCCTCCTGATGACACGTACACAGCTATGGATTCTCAGTCCATCTCTCCTGATTACTACAATTTACCAACTGCAAGAAAACAACAGTGAGATCATCAACATCGACACCatgtcaagagagagagagagagagagagagagagagagagacagaagataGATGACCAATGCTAGTATAGTTCTGTTTTTGAGCTGTGGATCAATATTGAACTCTATCTTTAAATAGTTGAAGAGTGAGAGCTTTACATTTAtgaacacatatatatattgagATTAACAACAGTGTGCAGGGATTTTGAACCGTTCTGCTTTGCACCTATGCATCCTTTTTCTAcgtgtgctgtatttttttttttcctctttttaattagaggtttatatttttatatttacctgCTAAAGTAACACACTGTACTCATGCTTCACTTATTCTTTAAGCACAAAAATGTGTGCTATTAAGGatttacacaataaaatcaaatatgATGTATAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU446509 lncRNA downstream 16696 15963956 ~ 15970091 (-) False vps54
TU446518 lncRNA downstream 38708 15947648 ~ 15948079 (-) True G376982
TU446486 lncRNA downstream 103364 15881973 ~ 15883423 (-) True G376961
TU446449 lncRNA downstream 164282 15812366 ~ 15822505 (-) True G376934
TU446293 lncRNA downstream 207085 15778247 ~ 15779702 (-) True G376840
TU446680 lncRNA upstream 165704 16165698 ~ 16169196 (-) False G377087
TU446681 lncRNA upstream 165704 16165698 ~ 16169196 (-) True G377087
TU446675 lncRNA upstream 178616 16178610 ~ 16179122 (-) True G377084
TU446676 lncRNA upstream 178668 16178662 ~ 16179122 (-) False G377084
TU446673 lncRNA upstream 216810 16216804 ~ 16221607 (-) False si:ch211-286b5.5
XM_034300052.1 mRNA downstream 1828 15963876 ~ 15984959 (-) True vps54
XM_026931863.2 mRNA downstream 31507 15945851 ~ 15955280 (-) True slc25a23a
XM_026931864.2 mRNA downstream 31507 15947227 ~ 15955280 (-) False slc25a23a
XM_034300061.1 mRNA downstream 44057 15929753 ~ 15942730 (-) True khsrp
XM_034300054.1 mRNA upstream 12278 16012272 ~ 16024511 (-) False LOC113537693
XM_034300053.1 mRNA upstream 12278 16012272 ~ 16024511 (-) True LOC113537693
XM_034300064.1 mRNA upstream 32005 16031999 ~ 16037975 (-) True LOC113537692
XM_034300063.1 mRNA upstream 45734 16045728 ~ 16051187 (-) True LOC117596132
XM_026931873.2 mRNA upstream 56950 16056944 ~ 16069586 (-) True peli1a
TU446429 other downstream 44101 15933637 ~ 15942686 (-) False khsrp
TU446479 other downstream 66234 15917628 ~ 15920553 (-) True G376956
TU446066 other downstream 528582 15455779 ~ 15458205 (-) False dpy30
TU446067 other downstream 529704 15455779 ~ 15457083 (-) False dpy30
TU446065 other downstream 529760 15455779 ~ 15457027 (-) False dpy30
TU446671 other upstream 152925 16152919 ~ 16155481 (-) False zgc:158803
TU446672 other upstream 155614 16155608 ~ 16164370 (-) False zgc:158803
XR_004577334.1 other upstream 425460 16425454 ~ 16475431 (-) False LOC113537389
TU447143 other upstream 845018 16845012 ~ 16851663 (-) True G377416
TU447144 other upstream 845018 16845012 ~ 16845602 (-) False G377416

Expression Profile