RNA id: XM_026931857.2


Basic Information

Item Value
RNA id XM_026931857.2
length 3284
RNA type mRNA
GC content 0.54
exon number 7
gene id samd1b
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 16379306 ~ 16388207 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGCGCAGGGTTTCCGGTCCACCTTAAGCGCCAACGCAGGCGTACAGCGGGGCTTCCGCTTCGTCCGCGGCCGGGCTCGAGCGGAGCTGAGGAGCGGAGcgcttctttttctctctgctttttttttctctccttttcacCGTCGCTTCATCTGGAGACAAGCGGAGCAGCGCAACGAGGCCACGAATCCTACCGGAAAACCTCCCTCCGCTGCAGTCGCGTGCgctgagaagaaaaaacaagcaaacaaacaaacaaacaatacaaaacacaaacaaacaatctaATATTTTCAACGATGTCCGAACCGCGGTACCGAGAGTGGATCCTGGAGACGATCGACTCGCTGCGCTCGAGGAAAGCGCGACCGGACCTCGAGAGGATCTGCCGGATGGTGCGCAGGAGACACGGCTCCGACCCAGACCGCACGCGGGCCGAGCTCGAGAAGCTCATCCAGGAGCAAACTGTGCTGAAAGTTAACTACAAGGGCTCTGTGTCGTACCGGAACGCCGCCAAAGTGCAACGGAAATGCCGACGGAAGGTCGAGCAGGCGGGCGAGCGCACCAAACACGCCGCTTTCGACAACAGTGGCAGTAGTAGTAACGCCAAGAACGACGACAACATCAGCGCGCGCAGTCCCGCGGACCGGGAGGAGCGCGAGCCGACGCCGTGCAGAGATCCCTCACCCAGCAGCTGCTCGCGCTCCGCTGAAGAGAAacgggaagaagaagaagaagaagacgaggaaggagaggaagaagcgGTTTTGTCTCCTGCGACAGGCGAAATCACCAGTTTCACGAGTTGCGACGGGAGAAACGGCTCGAGTGACACCTCCAGTCCCGCCGCTGGACGGGTCGaggggggaggaggaggaggaggaggagaagagacgCGCTCTGTACTCGGCCACGCGAGCACCGACCTGCCCGAGCCCGAGCCCGAGCCGGAACCGGAGCGGCGAACTTGCACGAGCGCTCGAAACAATAAGCAACACGCGCCCCAACTCAGGGCTGCAAAGAGCGGCGTCAAAGCGGCGGATCTGGGCGACCGGCTCGTGGCGGCCGTGTGGAGTCTGAGCGAGCGGAACAGCCGGGGTCACGCGCCGCTCGGGCTCAAAGAGATCCTGGGCTACCTCGGCACGCAGGCCGCGCACGCGGACGGCGAGAAGCTGACCCGCCACCGCGTCAAAGTGGTGCTGGAGCGCGAGATCGAGAAAGGTCGCCTGCGCAGGACGCGCCTCGGTCACATCACCGTGCCCGCGAGGAGATGGGGGGGGAGCACGGGGGCGGCCAAAGCGTCCGCGCGACTCCCGGCGAACACGAGCAGCGCGCCGCAGGACAGGCGCATCTCAAAGCAGGAAGAAGTAAAGGAGGAGGAGTCAATGGAGGTGGAAAGCAAGGAGGATGGCAAGATGGATGAAGAAGCCAAGCCTCCGACACAGCTCGAGCCCCAGAGCGCCAAACCTGAAGGAGAAGCAGACGTCAAAGTTCACGCGCCACTTTCAGCCGGCGTGGAGGTGAAGGCGTGCGGTGTTACTCACACACCAGTGATCATGGAGGAGGAGCTCCGGCCTTCACCGCTGTCATCGCCAGCGAAACTGAGTTCGGTTCCTCAGGAAGCCGAACAGTGTGGCacggaaggtGAAATGGTGATGCAGGGAGAGGCGATTCACACAGGAAGTTTAACGCAAGATCAAAGAGAAGCCATAACTGACCaagtgcacacactcacacagGATGAAGAGGTTGTCGTCTCAGACAGTGTCACGATTCCAGCCTCAATTCCCATTAAAAGTTattcAGTTTGTAAGGCTGAGGTGGGCGTGTCCTCCTGTCTGCTGACTCCATCTGCCTCTCCAGGAGCAGCTGAGGAGCGAGGGATGAACGGAGGAGTTTTTGTAAAGTCCGAGTCCAGCATCACAAATCCGGTCGACTGGACGGTGGCAGACGTCGCCAGTTATTTCACAGCGGCGGGATTTCCAGAGCAGGCTCTCGCCTTCAGGATGCAGGAAATCGACGGGAAGTCACTCCTCCTGATGCAGCGCAACGATGTCCTGACCGGCCTGTCAATCAGACTTGGCCCTGCCCTCAAGATCTACGAGCGCCATGTGAAGGTTTTGCAGAGGACCCACTTCCAGGACGACGAAgctttctgctgaggcacacactCTCGGTTCTATAGCGTGCACACACtcagatttctctctctcacacacaatggAGCTTTCTACAGAGACACAagcaactcacacacacactctaatgcACTGCGTACTGGACTTTGCCTTCCCTGTTAACAGTGGAACATTCCAGATATTTGTTTTACAGATACTagcgcacactcacacacgttaTTATCTCTTTCCATTCCTTTGAGAGGAACAACGAAGAACATCCAGTGAGGCATGAAAATGCTTCTGAGACATCACTGCACACTACAGAGTGACAAAAAAACAGGGTCATTTCATTAATAATGGACAGATCTTGTGTGTGCAGCTGAGATGGATGTGATTCCTCGGCTCATGAACTTTGACCTGGGATCAAATTCAACAGTCGATATCGCAGACGTGTGTGATGTCCATTAGGGGGCAGCAGATGGCTGGAGAAAAACACCCCAAAACACGGAAGTGTCTGCTTGGTTGATGATGGCATGTTTGAGGACTTCATCGTTGTCTGAAATCAGACTACGTGCACAGGATTTCACACCAACGCTGGACGTGCTTATTCGACTGcgcaacattttctttttttgagcaAGAGCTCACAGAGATCTGTTAGAACGTATTGCTGAGTCACAGGTTTTGACCTAAATAGCTGCGGCACTGCATCCCAGTCTTCCCTGTGCTTTTGGCTATGTGCTGTGTGCAGAGATTCTAGAACGGATTCTACAACCCACCAAGCTTTCATAGCAAGTTCTAGAATCTGTGCCAGAAAATGAAACTTATTATTGGAATCTGTCAGATTCTAGAAGAGGTTCTAGAATCTTCCCAAAGACCATTAGAAAGTTCTGGATTCTgtatcagaaaatgaaaaatgatttatagaATCTGTCAGATTCTAGAACAGGTTGTATAACCTTCCAAAGTTCCATAGAATGTTCTAGATTCTGGATTCTGTGTAAGAAGGACTTGGCTAGATTTGTTTTCTTGCTGAGCTCATATGAAGTGTACACTCtatgccaaaagtttgtgcacccctgaccatcacacccatatgtgtttgttgaacgtctcatttcagatttattccctgtgtgtttgctgttataataagctccactct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU446816 lncRNA downstream 28847 16350249 ~ 16350459 (-) True G377172
TU446815 lncRNA downstream 29246 16349377 ~ 16350060 (-) True G377171
TU446750 lncRNA downstream 113659 16263903 ~ 16265647 (-) True G377125
TU446673 lncRNA downstream 157699 16216804 ~ 16221607 (-) False si:ch211-286b5.5
TU446676 lncRNA downstream 200184 16178662 ~ 16179122 (-) False G377084
TU446851 lncRNA upstream 887 16389094 ~ 16390803 (-) True G377191
TU446915 lncRNA upstream 99583 16487790 ~ 16488131 (-) True G377244
TU447063 lncRNA upstream 191035 16579242 ~ 16581242 (-) False si:dkey-76b14.2
XR_004577292.1 lncRNA upstream 210706 16598913 ~ 16600222 (-) True LOC113547464
TU447074 lncRNA upstream 218123 16606330 ~ 16607547 (-) True G377359
XM_026931919.2 mRNA downstream 6099 16368498 ~ 16373207 (-) True ndufb7
XM_026931890.2 mRNA downstream 30849 16341237 ~ 16348457 (-) True dnajb1b
XM_026931865.2 mRNA downstream 133015 16238209 ~ 16246291 (-) True LOC113537406
XM_034300047.1 mRNA downstream 143159 16224807 ~ 16236147 (-) True LOC113537690
XM_026931886.2 mRNA upstream 10712 16398919 ~ 16411731 (-) True prkacab
XM_034299953.1 mRNA upstream 25742 16413949 ~ 16418007 (-) True asf1bb
XM_034300234.1 mRNA upstream 33054 16421261 ~ 16475431 (-) True LOC113537389
XM_034300087.1 mRNA upstream 109578 16497785 ~ 16525406 (-) True LOC113537390
XM_034300088.1 mRNA upstream 145627 16533834 ~ 16559160 (-) True LOC117595682
TU446672 other downstream 214936 16155608 ~ 16164370 (-) False zgc:158803
TU446671 other downstream 223825 16152919 ~ 16155481 (-) False zgc:158803
TU446429 other downstream 436620 15933637 ~ 15942686 (-) False khsrp
TU446479 other downstream 458753 15917628 ~ 15920553 (-) True G376956
TU446067 other downstream 922223 15455779 ~ 15457083 (-) False dpy30
XR_004577334.1 other upstream 37247 16425454 ~ 16475431 (-) False LOC113537389
TU447143 other upstream 456805 16845012 ~ 16851663 (-) True G377416
TU447144 other upstream 456805 16845012 ~ 16845602 (-) False G377416
TU447682 other upstream 794525 17182732 ~ 17194992 (-) False LOC113525650
TU447735 other upstream 878022 17266229 ~ 17268030 (-) True G377862

Expression Profile