RNA id: XM_026931862.2


Basic Information

Item Value
RNA id XM_026931862.2
length 1999
RNA type mRNA
GC content 0.50
exon number 14
gene id gcgrb
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 16630624 ~ 16663097 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCTGGCGCGCTTCACTTTTCCGCGGCGCGCGCTGCATGCCCAAAAGCGCACGAGCCGAACTGAAAACAAACTCAATCCCAGTGAGAGAAAGTAACAAACTTCCAGCGTTTCACTTTATGACTTTATGATTATTGATTTGGAACTTTTTgggggattttattttttttgtatgttggaTTACGAACGCCGAGGTTTCTGTCTCTGGCGCGCGCACGGAGGAGGACGATGAGCGATCGCGCGCGGCGGGTAGAGGAGACGCAGTGGCTCCGAGgtacagggGTGCTATGTTGAGGGTGGCAGCGTGATGAATTGACTCACAGGCTGAGGGATGTACCTGCggctgctcctgctcctgttaacattctcctcacacacacagGTCTGTCTGGCTCTGAAGGTGTTGCGGGAGCAATGGGCCGTCTACAGGAATGAGTGCATTCAGAGTTTCAGTGGCAGCCCGTCTGCTACAGGTTTGGTGTGTAACAGGACTTTTGATCACTACACGTGTTGGCCTGATGGCTCGCCTGGCTCCATCGTTAACGTGTCCTGCCCGTGGTATCTGCCGTGGTATCACAAAGttaagcAGGGTAGAGTGTATCGAGTGTGTGGTGCCGACGGTCGATGGGCCGACAGTAAAAACACCACAGAGTGTGATGAGAATGATGATCGACTGgaAGAGTATTGGCAGATTATAAGTAAATTCAGGATCATGTATACAGTGGGTTACTCGCTCTCTCTGGCAGCTTTGGTCCTTGCGCTGGGAATCCTTGCAGCCTTCAGGAAGTTACACTGCATGAGGAACAACATCCACATGAATCTGTTCGGCTCGTTCATCCTGCGCGCCGTGTCCATCTTGGTGAAAGACGCACTGCTGGATCTGATCAACACCGCGCAAACAGAACGATACCACTACCAGGACCAGAGCTTGTTCAACGtcaagATAACTGCGGGATGTCgggttgccatggtgatgatGCAGTACAGCGTGATAGCGAATAATTACTGGCTGCTGGTGGAGGGTTTGTACCTGCACAGTCTCCTGGCCATAACCGTCTTCTCAGAGAGAAACTACTTGTACGTGTACCTGACCATCGGctgggGTGCGCCGGTGATATTCGTGTTGCCGTGGGTGACACTGAAGTATCTGTATGAAAATGATCTATGCTGGGAGAAGAACGTAAACATGGGCTACTGGTGGATCATCCGCTCGCCTATCCTGTTTGCCTATCTGattaatttctttatatttattagaattATAAAGATCCTGATGTCCAAACTTAAGGCTCATCAGATGAGGTACACAGACTATAAGTTCAGATTGGCTAAATCCACACTTACACTCATTCCACTGTTGGGGATTCACGCCATCCTCTTCACCTTCGTCATTGACGAGTCTGTGGATAGAGAATCTCTGTTGCGGCTCATTCGCCTCTTCTATGACCTGTTCTTCAGCTCCTTCCAGGGTTTGCTGGTGGCCATTTTGTACTGCTTTGTCAACAAAGAGGTACAGAATGAAATGTTGAAGCGATGGAAGCGTTGGAAGCTCGGGAAAGACATCGAGGAGGAATATCgtaacacacacagccagacgGCTCACGGCAAGAGTGCTAGTGTCAACGTGGCTTTACCGCCGGAACGTTCCGACACCCCCGAGTCCGCAGCGTCGGTCCCGCCCTCAGAGGAGAGCCGCCGGCTTGTGATTAGCTGCCGGAACGGTGCAGCACTGGCGCAAGGGATCGGCAGAGCGGGGCTGCAAGAGGGAACCAGTAACTGCAGCTCTCTGACCGAGGACATGTGCTTAGAGGAGCGAATTCACAACACGGACCATCCAGCAGGGACACAGGAATGCGACGTCTGAGGAAACTTTGGCCTCTTGAGGTTTTTGATGATAAtgtgttccaaaaaaaaagggataaaAATTGCTTCTTATaatagaaaaatgaaatatgtggtagataaacactactacacacactaaaagacacatatacagca

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU447074 lncRNA downstream 23077 16606330 ~ 16607547 (-) True G377359
XR_004577292.1 lncRNA downstream 30402 16598913 ~ 16600222 (-) True LOC113547464
TU447063 lncRNA downstream 49382 16579242 ~ 16581242 (-) False si:dkey-76b14.2
TU446915 lncRNA downstream 142493 16487790 ~ 16488131 (-) True G377244
TU446851 lncRNA downstream 239821 16389094 ~ 16390803 (-) True G377191
TU447151 lncRNA upstream 193682 16856779 ~ 16858709 (-) True G377422
TU447172 lncRNA upstream 332301 16995398 ~ 16995649 (-) True G377441
TU447211 lncRNA upstream 369806 17032903 ~ 17052265 (-) True G377474
XR_004577336.1 lncRNA upstream 405439 17068536 ~ 17078161 (-) True LOC117596165
TU447707 lncRNA upstream 578738 17241835 ~ 17253715 (-) True G377847
XM_026931872.2 mRNA downstream 40994 16583379 ~ 16589630 (-) True zgc:65894
XM_034300089.1 mRNA downstream 47487 16566253 ~ 16583137 (-) True si:dkey-76b14.2
XM_034300088.1 mRNA downstream 71464 16533834 ~ 16559160 (-) True LOC117595682
XM_034300087.1 mRNA downstream 105218 16497785 ~ 16525406 (-) True LOC113537390
XM_034300234.1 mRNA downstream 155193 16421261 ~ 16475431 (-) True LOC113537389
XM_034300235.1 mRNA upstream 17396 16680493 ~ 16695687 (-) True slc25a10
XM_034299945.1 mRNA upstream 37000 16700097 ~ 16701130 (-) True LOC113537431
XM_026931887.2 mRNA upstream 76395 16739492 ~ 16742838 (-) True si:dkey-27j5.5
XM_026931856.2 mRNA upstream 125024 16788121 ~ 16793721 (-) True LOC113537398
XM_026931903.2 mRNA upstream 202131 16865228 ~ 16872437 (-) True LOC113537435
XR_004577334.1 other downstream 155193 16425454 ~ 16475431 (-) False LOC113537389
TU446672 other downstream 466254 16155608 ~ 16164370 (-) False zgc:158803
TU446671 other downstream 475143 16152919 ~ 16155481 (-) False zgc:158803
TU446429 other downstream 687938 15933637 ~ 15942686 (-) False khsrp
TU446479 other downstream 710071 15917628 ~ 15920553 (-) True G376956
TU447143 other upstream 181915 16845012 ~ 16851663 (-) True G377416
TU447144 other upstream 181915 16845012 ~ 16845602 (-) False G377416
TU447682 other upstream 519635 17182732 ~ 17194992 (-) False LOC113525650
TU447735 other upstream 603132 17266229 ~ 17268030 (-) True G377862
TU447860 other upstream 1044903 17708000 ~ 17712592 (-) False ubl5

Expression Profile