RNA id: XM_026931868.2


Basic Information

Item Value
RNA id XM_026931868.2
length 1580
RNA type mRNA
GC content 0.52
exon number 13
gene id si:ch211-286b5.4
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 16209255 ~ 16216035 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACAGCTCACTGAGTGTGATTGATTAGCAGTAATAACAGACACCTGAGGCAGGTAGGAGCTCACACTCTCAGCGTCAGTCTCGAACTCCTGAGGATAGGATCATATTAAATCTGATCTCTTTCAAAGAAGACAAGAGACGAAGAGTTTACACACTGTTCAAGCACAAACTCAGGTCTGGTGTAAAAGATGGCATGCAAACAAGAAGGAAGACTGCTGACATCTCATGGAAGGACTCACGAGATCTCAGAGATCCAGAGCTCTCGAGCGTCGCTGCAGGTCAGTTCTCCGTGCAGCACGGCTTCCAACAGGATTCTCAAAGAAGAGCTGAATGAACAGAATAGATCACTTCAGGAGCAGCTTATGGAAAAAGATCAGTATATCACTAGGCTGCAAGATGCACTtcagagtgagagggagaagAACTCCAAATTGCAGTCTCGTTTTAACCAGCAGGCAGTTGAATTAAAACGCAGAGAGCAGCTCGTCAACAGGATGAGGGAGAAGCTCTCACAgtttacagacagacacagagaccggGGAGtgtCTATAGAGATCATAAACGCTCTTCCTAAGCCATCGGGACAGAGAGAGCCCATGTCCCGGAGTGCACGGCCTGATGGGAGAAAAGAGGAGGCGCTGAGGTCAATGCTGGAGAGGAGGGAGGCTGAGCTCAGGGAGGCCATGAAACTGCGTCACAGCCTCACGACGCTACTGCACGCGCTCAGAACCGACATGCAGCAGaCTCTAAAGGAGATCGTGGACACTGAGGAAGAGAAGGCAGACGCCAGCAGACTGGTCCAATCAGAGCAGTCACTTGGTGATCATGTGACAGGGGGTGTGTTTCTGGAGTGGACGCATGTACAGCAGAGGCTGAAGGAGCTGCAGGCACAGAgcccaTCTGCAGTGAGAACAGACCAGGAGAAGCTCCTGGCTCAGCTTGAGGAAGAGCTGGAGCAGAGCAGAGAGCTGGTTCGAGTACAGCAGCAGCTACTGCAGgacaGCGTGGCTGCTCCTCTCCCAGACCCTCTGATCGACTCCTACTATCTGGAGGAGTGGGAGCGTCTTCAGGACAAGTGGGCAGAATTTAACAGGCAGAGGCGGAGCTTCCAGCAGGAGAGGCAGGCCTTCACTGATGCTGCAATCCGATTGGGCCGCGAGagatGTGAGTTTGAGCAGCAGAAGGCATCTCTGTTAAAACAGCAGTTCCTCAGCACATCTCCAGTTATGAAGACTTCACACTCCAACAGGAGAGAGAGCACAGCACTCAGTGACCTGCGAATGATGGCTCCAGATCGgctgtctctctccccctgtGTCACTCCATCCTCtgaggggtcagaggtcacgcCCTGGTCAGGGCAGAATACAGGAATGACCCCCAACACCCCTGAGCTCTACTGCGTCCTTCAGCTGCCATTTTACTGCAGggaaAGTGCCAGTCCTCCGTCTGAGACTTGGGTGAAGGAGACACAGAGAGGTGACATCAGCTCTGACAAACAAAACATGGACAACTGGCCCTTttaattctgtgtgtgagagtgatgcTGCACTTTAACTAAATAAAGTCCTATAAACccta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU446675 lncRNA downstream 30133 16178610 ~ 16179122 (-) True G377084
TU446676 lncRNA downstream 30133 16178662 ~ 16179122 (-) False G377084
TU446680 lncRNA downstream 40059 16165698 ~ 16169196 (-) False G377087
TU446681 lncRNA downstream 40059 16165698 ~ 16169196 (-) True G377087
TU446509 lncRNA downstream 239164 15963956 ~ 15970091 (-) False vps54
TU446673 lncRNA upstream 770 16216804 ~ 16221607 (-) False si:ch211-286b5.5
TU446750 lncRNA upstream 47869 16263903 ~ 16265647 (-) True G377125
TU446815 lncRNA upstream 133343 16349377 ~ 16350060 (-) True G377171
TU446816 lncRNA upstream 134215 16350249 ~ 16350459 (-) True G377172
TU446851 lncRNA upstream 173060 16389094 ~ 16390803 (-) True G377191
XM_026931905.2 mRNA downstream 694 16207565 ~ 16208561 (-) True nanos3
XM_034300050.1 mRNA downstream 8988 16179312 ~ 16200267 (-) False cc2d1a
XM_034300051.1 mRNA downstream 8988 16179312 ~ 16200267 (-) True cc2d1a
XM_034300082.1 mRNA downstream 30760 16170823 ~ 16178495 (-) True mri1
XM_034300071.1 mRNA downstream 44895 16153821 ~ 16164360 (-) True zgc:158803
XM_026931922.2 mRNA upstream 716 16216750 ~ 16221615 (-) True si:ch211-286b5.5
XM_034300047.1 mRNA upstream 8773 16224807 ~ 16236147 (-) True LOC113537690
XM_034300046.1 mRNA upstream 8773 16224807 ~ 16236146 (-) False LOC113537690
XM_034300048.1 mRNA upstream 8773 16224807 ~ 16234585 (-) False LOC113537690
XM_026931865.2 mRNA upstream 22175 16238209 ~ 16246291 (-) True LOC113537406
TU446672 other downstream 44885 16155608 ~ 16164370 (-) False zgc:158803
TU446671 other downstream 53774 16152919 ~ 16155481 (-) False zgc:158803
TU446429 other downstream 266569 15933637 ~ 15942686 (-) False khsrp
TU446479 other downstream 288702 15917628 ~ 15920553 (-) True G376956
TU446067 other downstream 752172 15455779 ~ 15457083 (-) False dpy30
XR_004577334.1 other upstream 209420 16425454 ~ 16475431 (-) False LOC113537389
TU447143 other upstream 628978 16845012 ~ 16851663 (-) True G377416
TU447144 other upstream 628978 16845012 ~ 16845602 (-) False G377416
TU447682 other upstream 966698 17182732 ~ 17194992 (-) False LOC113525650
TU447735 other upstream 1050195 17266229 ~ 17268030 (-) True G377862

Expression Profile