RNA id: XM_026931872.2


Basic Information

Item Value
RNA id XM_026931872.2
length 1809
RNA type mRNA
GC content 0.54
exon number 4
gene id zgc:65894
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 16583379 ~ 16589630 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGAGGGGTCGAGAGGGAGCGCGCAGTGTCGGGCGCGTGCACTTTGCCGGAGccggtgctgctgctgctgctgcagggAGAGGAGCCGCTGCAAGGGCTTTATTCTGTTCACTGTTTATTCCATTCGCTCTTTTTCCACCGACACCAACATGCGCGAGATCGTTCACCTGCAGGCGGGACAGTGCGGCAACCAGATCGGAGCCAAGTTCTGGGAGGTGATCAGTGACGAGCATGGCATCGATCCCACCGGCACCTATCACGGAGACAGCGACCTGCAGCTGGACCGCATCAGCGTCTACTACAATGAAGCCACAGGAGGGAAGTATGTTCCTCGTGCCATCTTGGTGGATCTGGAACCAGGAACCATGGACTCGGTTCGATCTGGACCTTTCGGACAGATCTTCAGACCCGACAACTTTGTCTTTGGCCAGAGTGGTGCTGGGAATAACTGGGCCAAGGGCCACTACACGGAGGGAGCCGAGTTAGTGGACTCCGTCCTGGATGTGGTGCGTAAGGAGGCTGAGAGCTGCGACTGTCTGCAGGGTTTCCAGCTCACCCACTCTCTGGGCGGCGGTACTGGCTCAGGCATGGGCACGCTGCTAATCAGCAAGATTCGTGAAGAATATCCCGACCGTATCATGAACACCTTCAGCGTGGTGCCCTCACCCAAAGTGTCTGATACAGTGGTGGAGCCCTACAACGCCACGCTGTCTGTGCACCAGCTGGTGGAGAACACTGACGAGACCTACTGCATTGACAACGAAGCTCTGTACGACATCTGCTTCCGTACGCTCAAGCTGACCACACCCACTTACGGGGATCTGAACCATCTGGTCTCAGCCACCATGAGCGGAGTCACGACTTGCCTTCGCTTCCCCGGGCAGCTGAACGCTGATTTGCGCAAGCTGGCCGTCAACATGGTGCCATTCCCACGTCTTCACTTCTTCATGCCTGGTTTTGCGCCCTTGACCAGCAGGGGGAGTCAGCAGTACCGCGCTCTTTCCGTCCCTGAACTGACGCAGCAGATGTTCGACGCTAAGAACATGATGGCTGCCTGCGACCCGCGCCATGGCCGTTACCTCACCGTCGCTGCCGTGTTCCGCGGCCGCATGTCCATGAAGGAGGTCGATGAGCAGATGCTCAATGTCCAAAACAAGAACAGCAGCTACTTCGTGGAATGGATCCCCAACAACGTCAAAACAGCCGTGTGCGACATCCCACCTCGCGGCCTCAAGATGGCCGCCACCTTCATCGGCAACAGCACGGCCATCCAGGAGCTGTTCAAGCGCATCTCTGAGCAGTTCACTGCCATGTTCAGGAGAAAGGCCTTCCTCCACTGGTATACAGGAGAAGGAATGGATGAGATGGAGTTTACTGAGGCTGAGAGCAACATGAATGACCTGGTCTCCGAGTACCAGCAGTACCAGGACGCCACAGCCGAAGAGGGAGAGTTTGAGGAGGAGGGTGAAGAAGAGGCCGCCTAAATCGCCCCTTCTCCTTCATCTCATCCGGTTATGGTTGCTTCTTTTGTGATTTCTTGCTTACTTTCCCACATTCCCCTGCTTTTATTCACTCTGGTGTTTTGTGAAGGTGTATCTGTTCAAGATATAAACTCTCATCGATGCATTCTCACTTTAGAGgtggagtttttttctttttctgtgctCTCTTGAAGGTAACTTAGTCGGTTAAACTCTTAGTCTGTTGTGTTCCTGTTGTGGGTGATACAGCCTATAATACCTActtgttttcaaaaataaagcAACCTTAACTTCAGCTTagattgaataaaaatgtggtTAAACTCAA

Function

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07375 TUBB; tubulin beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU447063 lncRNA downstream 2137 16579242 ~ 16581242 (-) False si:dkey-76b14.2
TU446915 lncRNA downstream 95248 16487790 ~ 16488131 (-) True G377244
TU446851 lncRNA downstream 192576 16389094 ~ 16390803 (-) True G377191
TU446816 lncRNA downstream 232920 16350249 ~ 16350459 (-) True G377172
TU446815 lncRNA downstream 233319 16349377 ~ 16350060 (-) True G377171
XR_004577292.1 lncRNA upstream 9283 16598913 ~ 16600222 (-) True LOC113547464
TU447074 lncRNA upstream 16700 16606330 ~ 16607547 (-) True G377359
TU447084 lncRNA upstream 31537 16621167 ~ 16741989 (-) False slc25a10
TU447085 lncRNA upstream 55466 16645096 ~ 16686484 (-) False slc25a10
TU447151 lncRNA upstream 267149 16856779 ~ 16858709 (-) True G377422
XM_034300089.1 mRNA downstream 242 16566253 ~ 16583137 (-) True si:dkey-76b14.2
XM_034300088.1 mRNA downstream 24219 16533834 ~ 16559160 (-) True LOC117595682
XM_034300087.1 mRNA downstream 57973 16497785 ~ 16525406 (-) True LOC113537390
XM_034300234.1 mRNA downstream 107948 16421261 ~ 16475431 (-) True LOC113537389
XM_034299953.1 mRNA downstream 165372 16413949 ~ 16418007 (-) True asf1bb
XM_026931861.2 mRNA upstream 40994 16630624 ~ 16663097 (-) False gcgrb
XM_026931862.2 mRNA upstream 40994 16630624 ~ 16663097 (-) False gcgrb
XM_026931860.2 mRNA upstream 40994 16630624 ~ 16663097 (-) True gcgrb
XM_034300235.1 mRNA upstream 90863 16680493 ~ 16695687 (-) True slc25a10
XM_034299945.1 mRNA upstream 110467 16700097 ~ 16701130 (-) True LOC113537431
XR_004577334.1 other downstream 107948 16425454 ~ 16475431 (-) False LOC113537389
TU446672 other downstream 419009 16155608 ~ 16164370 (-) False zgc:158803
TU446671 other downstream 427898 16152919 ~ 16155481 (-) False zgc:158803
TU446429 other downstream 640693 15933637 ~ 15942686 (-) False khsrp
TU446479 other downstream 662826 15917628 ~ 15920553 (-) True G376956
TU447143 other upstream 255382 16845012 ~ 16851663 (-) True G377416
TU447144 other upstream 255382 16845012 ~ 16845602 (-) False G377416
TU447682 other upstream 593102 17182732 ~ 17194992 (-) False LOC113525650
TU447735 other upstream 676599 17266229 ~ 17268030 (-) True G377862
TU447860 other upstream 1118370 17708000 ~ 17712592 (-) False ubl5

Expression Profile